Expression of 1-1-2.1.17.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06375 | 0.951 |
27DAP/17DAP | 1.0179 | 1 |
39DAP/27DAP | 1.3962 | 0.301 |
41DAP/39DAP | 0.88226 | 0.524 |
42DAP/41DAP | 0.94486 | 1 |
43DAP/42DAP | 1.13836 | 1 |
47DAP/43DAP | 0.80243 | 0.39 |
52DAP/47DAP | 0.82577 | 0.593 |
57DAP/52DAP | 1.00474 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31971 | 0.522 |
17DAP/reference | 1.50758 | 0.248 |
27DAP/reference | 1.22229 | 0.569 |
39DAP/reference | 1.0851 | 0.828 |
41DAP/reference | 1.06629 | 1 |
42DAP/reference | 1.35671 | 0.004 |
43DAP/reference | 1.0065 | 0.84 |
47DAP/reference | 1.42119 | 0.001 |
52DAP/reference | 1.27516 | 0.062 |
57DAP/reference | 1.61685 | 0.043 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94742 | 0.442 |
27DAP/17DAP | 1.0291 | 0.942 |
39DAP/27DAP | 0.93743 | 0.54 |
41DAP/39DAP | 1.05272 | 0.997 |
42DAP/41DAP | 0.99761 | 0.872 |
43DAP/42DAP | 0.87763 | 0.149 |
47DAP/43DAP | 0.90869 | 0.31 |
52DAP/47DAP | 0.82078 | 0.077 |
57DAP/52DAP | 0.84579 | 0.299 |
57DAP/7DAP | 0.41757 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74531 | 0.088 |
17DAP/reference | 0.71978 | 0.011 |
27DAP/reference | 0.92954 | 0.125 |
39DAP/reference | 0.77318 | 0.011 |
41DAP/reference | 0.84223 | 0.039 |
42DAP/reference | 0.79523 | 0.01 |
43DAP/reference | 0.74502 | 0.011 |
47DAP/reference | 0.94379 | 0.383 |
52DAP/reference | 0.76467 | 0.022 |
57DAP/reference | 0.98151 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89097 | 0.342 |
17DAP/reference | 1.26177 | 0.471 |
27DAP/reference | 1.08273 | 0.948 |
39DAP/reference | 1.16288 | 0.571 |
41DAP/reference | 1.18536 | 0.573 |
42DAP/reference | 1.28964 | 0.062 |
43DAP/reference | 1.27493 | 0.417 |
47DAP/reference | 1.3941 | 0.024 |
52DAP/reference | 1.23807 | 0.528 |
57DAP/reference | 1.33285 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73437 | 0.043 |
17DAP/reference | 0.79519 | 0.073 |
27DAP/reference | 0.83818 | 0.147 |
39DAP/reference | 1.00322 | 0.643 |
41DAP/reference | 1.04921 | 0.605 |
42DAP/reference | 1.24864 | 0.131 |
43DAP/reference | 1.30878 | 0.064 |
47DAP/reference | 1.46796 | 0.015 |
52DAP/reference | 0.91749 | 0.385 |
57DAP/reference | 1.12878 | 0.522 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.48271 | 0.966 |
26DAP/20DAP | 2.55904 | 0.098 |
34DAP/26DAP | 0.79918 | 0.174 |
51DAP/34DAP | 0.79461 | 0.19 |
52DAP/51DAP | 1.06575 | 0.616 |
53DAP/52DAP | 1.01575 | 0.961 |
55DAP/53DAP | 1.14488 | 0.555 |
57DAP/55DAP | 1.06554 | 1 |
62DAP/57DAP | 1.14421 | 0.868 |
68DAP/62DAP | 1.17434 | 0.657 |
68DAP/14DAP | 0.89065 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.03526 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.79287 | 0.018 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.9903 | |
Mature Eggplant/Ripe Tomato | 1.01598 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.33598 | 0.742 |
1-1-2/M82 | 1.00255 | 1 |
12-2/M82 | 0.85796 | 0.955 |
12-4/M82 | 1.09401 | 0.611 |
1-3/M82 | 1.18053 | 1 |
2-1-1/M82 | 1.22566 | |
2-1/M82 | 1.38733 | 1 |
2-6/M82 | 1.13779 | 0.594 |
3-2/M82 | 1.86407 | |
4-1-1/M82 | 1.03217 | 1 |
4-1/M82 | 1.0068 | |
4-3-2/M82 | 1.05528 | |
4-3/M82 | 1.10176 | 1 |
5-3/M82 | 0.96801 | 1 |
6-2/M82 | 1.85208 | |
6-3/M82 | 0.99097 | 1 |
7-1/M82 | 0.99483 | |
7-2/M82 | 0.95599 | 0.796 |
9-3-2/M82 | 1.23382 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.58908 | 0.277 |
IL2-6/WTpooled | 0.93411 | 1 |
IL7-5/WTpooled | 1.19162 | 0.792 |
IL7-3/WTpooled | 1.15116 | 1 |
IL12-4/WTpooled | 1.14577 | 0.737 |
IL1-4/WTpooled | 1.16559 | 0.426 |
WT/WTpooled | 0.89963 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11044 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9756 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.53638 | 1 |
DC3000/delta hrp 24h | 0.72417 | 0.111 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24998 | 0.063 |
DC3000 delta B/DC3000 delta AB | 1.41415 | 0.086 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9947 | 1 |
Var 0h | 0.98272 | 1 |
Var 12h I row2-row1 | 0.94933 | 0.705 |
Var 12h NI row2-row1 | 1.12727 | 0.649 |
Var 36h I row2-row1 | 1.1093 | 1 |
Var 36h NI row2-row1 | 0.8962 | 0.61 |
Var 60h I row2-row1 | 0.82971 | 0.439 |
Var 60h NI row2-row1 | 0.86013 | 0.818 |
Time course 0hI-0hNI | 1.11772 | 0.537 |
Time course 12hI-12hNI | 1.0217 | 0.854 |
Time course 36hI-36hNI | 1.27914 | 0.039 |
Time course 60hI-60hNI | 1.79651 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83137 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 1.08353 | 1 |
transgenic ySAMdc/azygous control (red) | 0.80587 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90905 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.70898 | 0.285 |
Manapal/WT (red) | 0.98269 | 0.863 |
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