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Expression of 1-1-2.1.18.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.782040.06
27DAP/17DAP1.307070.703
39DAP/27DAP1.275120.466
41DAP/39DAP1.318860.642
42DAP/41DAP0.687120.774
43DAP/42DAP0.811340.743
47DAP/43DAP1.169630.756
52DAP/47DAP1.437990.676
57DAP/52DAP0.934230.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.03750.587
17DAP/reference1.131120.041
27DAP/reference1.048110.612
39DAP/reference1.046560.368
41DAP/reference1.237710.122
42DAP/reference1.114510.125
43DAP/reference1.007610.942
47DAP/reference1.151770.048
52DAP/reference1.001370.73
57DAP/reference0.983880.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.004371
27DAP/17DAP0.990770.943
39DAP/27DAP1.083470.447
41DAP/39DAP0.983470.997
42DAP/41DAP1.000730.876
43DAP/42DAP1.130330.273
47DAP/43DAP0.960820.75
52DAP/47DAP1.000690.97
57DAP/52DAP0.953990.566
57DAP/7DAP1.011351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850420.138
17DAP/reference0.79810.02
27DAP/reference0.846710.019
39DAP/reference0.811490.023
41DAP/reference0.889680.223
42DAP/reference0.819010.06
43DAP/reference0.758770.011
47DAP/reference0.981210.671
52DAP/reference0.767280.026
57DAP/reference0.757270.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.1170.102
17DAP/reference1.190940.072
27DAP/reference1.246440.087
39DAP/reference0.943420.348
41DAP/reference1.043790.893
42DAP/reference1.404820.008
43DAP/reference1.432510.031
47DAP/reference1.28690.024
52DAP/reference1.1950.053
57DAP/reference1.292760.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.844460.039
17DAP/reference0.954210.592
27DAP/reference0.774970.048
39DAP/reference0.801750.029
41DAP/reference0.947530.417
42DAP/reference1.122670.73
43DAP/reference0.913470.319
47DAP/reference1.290630.007
52DAP/reference0.810710.153
57DAP/reference1.116590.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.908261
26DAP/20DAP0.774030.317
34DAP/26DAP1.101551
51DAP/34DAP0.924210.571
52DAP/51DAP0.909451
53DAP/52DAP1.05390.712
55DAP/53DAP0.960610.675
57DAP/55DAP1.129060.643
62DAP/57DAP0.908830.28
68DAP/62DAP0.792020.109
68DAP/14DAP0.733410.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.325810.034

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.907350.471
Mature Green Tomato/Ripe Tomato1.075410.69
Immature Eggplant/Mature Eggplant1.292370.066
Ripe Pepper/Ripe Tomato0.331010.224
Mature Eggplant/Ripe Tomato0.822751

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.105920.877
1-1-2/M820.948861
12-2/M821.46402N/A
12-4/M820.87369N/A
1-3/M821.011591
2-1-1/M82N/AN/A
2-1/M821.07532N/A
2-6/M820.849881
3-2/M821.143370.549
4-1-1/M820.942251
4-1/M82N/AN/A
4-3-2/M820.860360.698
4-3/M821.068411
5-3/M821.016851
6-2/M82N/AN/A
6-3/M820.99751
7-1/M820.95783N/A
7-2/M820.818040.796
9-3-2/M820.75591N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.29672N/A
IL2-6/WTpooled0.794120.473
IL7-5/WTpooled8.297981
IL7-3/WTpooled1.353521
IL12-4/WTpooled1.264960.646
IL1-4/WTpooled0.797150.699
WT/WTpooled1.006761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.991871

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.005891
DC3000/delta hrp 6h0.995080.95
DC3000/delta hrp 12h1.367281
DC3000/delta hrp 24h1.301980.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.74949N/A
DC3000 delta B/DC3000 delta AB0.938250.605

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.87321
Exp 36h1.214160.489
Exp 60h1.052441

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009081
Var 0h0.99061
Var 12h I row2-row11.156890.254
Var 12h NI row2-row10.93470.327
Var 36h I row2-row11.00442N/A
Var 36h NI row2-row11.196571
Var 60h I row2-row10.908070.306
Var 60h NI row2-row10.999141
Time course 0hI-0hNI1.016220.867
Time course 12hI-12hNI1.023561
Time course 36hI-36hNI0.958260.323
Time course 60hI-60hNI1.186630.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.073030.326
transgenic ySAMdc/azygous control (breaker)1.138510.248
transgenic ySAMdc/azygous control (red)0.992961

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.081520.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.28080.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.911840.172
Manapal/WT (break)0.837910.297
Manapal/WT (red)0.834570.181