Expression of 1-1-2.1.3.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.58883 | 0.656 |
27DAP/17DAP | 1.20982 | 0.801 |
39DAP/27DAP | 2.84804 | 0.047 |
41DAP/39DAP | 0.88319 | 0.533 |
42DAP/41DAP | 0.80304 | 1 |
43DAP/42DAP | 1.31182 | 1 |
47DAP/43DAP | 0.75683 | 0.314 |
52DAP/47DAP | 3.37654 | 0.05 |
57DAP/52DAP | 1.40854 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88115 | 0.293 |
17DAP/reference | 0.53281 | 0.057 |
27DAP/reference | 0.53503 | 0.019 |
39DAP/reference | 0.35738 | 0.013 |
41DAP/reference | 0.25415 | 0.01 |
42DAP/reference | 1.4753 | 0.352 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.29269 | 0.419 |
52DAP/reference | 0.63573 | 0.046 |
57DAP/reference | 0.70485 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.64024 | 0.08 |
27DAP/17DAP | 0.9447 | 0.724 |
39DAP/27DAP | 1.51562 | 0.292 |
41DAP/39DAP | 1.31023 | 1 |
42DAP/41DAP | 1.54199 | 0.006 |
43DAP/42DAP | 1.30862 | 0.042 |
47DAP/43DAP | 1.05121 | 0.779 |
52DAP/47DAP | 0.47746 | 0.034 |
57DAP/52DAP | 1.16591 | 0.253 |
57DAP/7DAP | 0.98854 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.7378 | 0.025 |
17DAP/reference | 1.00756 | 1 |
27DAP/reference | 1.4773 | 0.012 |
39DAP/reference | 0.90332 | 0.264 |
41DAP/reference | 1.5701 | 0.017 |
42DAP/reference | 3.1236 | 0.007 |
43DAP/reference | 4.08021 | 0.006 |
47DAP/reference | 2.86955 | 0.018 |
52DAP/reference | 2.30321 | 0.007 |
57DAP/reference | 0.90978 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10364 | 0.642 |
17DAP/reference | 0.76246 | 0.12 |
27DAP/reference | 1.56032 | 0.025 |
39DAP/reference | 1.06566 | 1 |
41DAP/reference | 1.01378 | 0.666 |
42DAP/reference | 1.42129 | 0.02 |
43DAP/reference | 0.54627 | 0.011 |
47DAP/reference | 0.57037 | 0.009 |
52DAP/reference | 0.41122 | 0.004 |
57DAP/reference | 0.39349 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13231 | 0.827 |
17DAP/reference | 0.683 | 0.099 |
27DAP/reference | 1.03545 | 0.883 |
39DAP/reference | 1.59692 | 0.046 |
41DAP/reference | 1.37587 | 0.01 |
42DAP/reference | 2.74765 | 0.006 |
43DAP/reference | 3.53585 | 0.006 |
47DAP/reference | 0.65848 | 0.015 |
52DAP/reference | 1.47315 | 0.108 |
57DAP/reference | 1.57866 | 0.304 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93436 | 1 |
26DAP/20DAP | 1.06256 | 1 |
34DAP/26DAP | 1.34866 | 1 |
51DAP/34DAP | 1.7441 | 0.035 |
52DAP/51DAP | 0.68368 | 0.151 |
53DAP/52DAP | 2.32672 | 0.034 |
55DAP/53DAP | 0.46151 | 0.016 |
57DAP/55DAP | 1.26318 | 0.826 |
62DAP/57DAP | 0.44727 | 0.002 |
68DAP/62DAP | 2.39993 | 0.017 |
68DAP/14DAP | 2.20051 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.80882 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.68235 | 0.182 |
Mature Green Tomato/Ripe Tomato | 0.53368 | 0.02 |
Immature Eggplant/Mature Eggplant | 1.93149 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.52962 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.35494 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.57188 | 0.877 |
1-1-2/M82 | 1.4142 | 1 |
12-2/M82 | 0.89446 | 0.955 |
12-4/M82 | 1.49272 | 1 |
1-3/M82 | 5.52327 | 0.277 |
2-1-1/M82 | 1.11828 | 1 |
2-1/M82 | 0.6672 | 0.519 |
2-6/M82 | 1.81108 | 0.351 |
3-2/M82 | 1.35562 | 0.967 |
4-1-1/M82 | 1.26319 | 1 |
4-1/M82 | 0.57234 | |
4-3-2/M82 | 1.95198 | 0.284 |
4-3/M82 | 1.30128 | 1 |
5-3/M82 | 1.42641 | 1 |
6-2/M82 | 2.71537 | 0.253 |
6-3/M82 | 1.03401 | 1 |
7-1/M82 | 1.27096 | 1 |
7-2/M82 | 3.28973 | 0.385 |
9-3-2/M82 | 2.5896 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98911 | 1 |
IL2-6/WTpooled | 1.20971 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94766 | |
IL12-4/WTpooled | 0.86536 | 1 |
IL1-4/WTpooled | 1.20104 | 1 |
WT/WTpooled | 1.02596 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.51833 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87887 | 0.807 |
DC3000/delta hrp 6h | 0.87686 | 0.95 |
DC3000/delta hrp 12h | 1.50347 | 1 |
DC3000/delta hrp 24h | 1.10485 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03946 | 1 |
DC3000 delta B/DC3000 delta AB | 1.25107 | 0.308 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17709 | 1 |
Exp 36h | 1.24648 | 0.489 |
Exp 60h | 1.0166 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.89122 | 1 |
Var 0h | 0.94576 | 1 |
Var 12h I row2-row1 | 0.94343 | 0.77 |
Var 12h NI row2-row1 | 0.9894 | 1 |
Var 36h I row2-row1 | 1.05016 | 1 |
Var 36h NI row2-row1 | 1.34801 | 0.482 |
Var 60h I row2-row1 | 1.08895 | 1 |
Var 60h NI row2-row1 | 1.24449 | 0.539 |
Time course 0hI-0hNI | 0.9342 | 0.482 |
Time course 12hI-12hNI | 1.05511 | 0.724 |
Time course 36hI-36hNI | 0.86281 | 0.052 |
Time course 60hI-60hNI | 0.12655 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.17103 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.80926 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.95427 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.7504 | 0.045 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09715 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0924 | 0.307 |
Manapal/WT (break) | 1.05756 | 0.381 |
Manapal/WT (red) | 1.07256 | 0.413 |
|
|