Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-2.1.3.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03581	0.919
27DAP/17DAP	1.21608	0.804
39DAP/27DAP	0.78578	0.443
41DAP/39DAP	1.37132	0.261
42DAP/41DAP	0.94584	1
43DAP/42DAP	0.97483	0.925
47DAP/43DAP	1.10346	0.609
52DAP/47DAP	1.01538	0.982
57DAP/52DAP	1.05674	0.958

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22451	0.29
17DAP/reference	0.88126	0.111
27DAP/reference	0.91139	0.514
39DAP/reference	1.16398	0.162
41DAP/reference	1.0377	1
42DAP/reference	0.98228	0.425
43DAP/reference	1.15733	N/A
47DAP/reference	0.89307	0.366
52DAP/reference	1.19729	0.407
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.21118	0.422
27DAP/17DAP	0.79621	0.164
39DAP/27DAP	0.94789	0.45
41DAP/39DAP	1.06904	0.801
42DAP/41DAP	0.91663	0.447
43DAP/42DAP	0.94181	0.351
47DAP/43DAP	1.01747	0.92
52DAP/47DAP	1.04622	0.826
57DAP/52DAP	0.89802	0.283
57DAP/7DAP	0.91836	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.28306	0.053
17DAP/reference	1.07634	1
27DAP/reference	1.46498	0.007
39DAP/reference	1.301	0.149
41DAP/reference	1.09615	0.416
42DAP/reference	0.99179	0.612
43DAP/reference	1.1107	0.483
47DAP/reference	1.0344	0.948
52DAP/reference	1.06685	0.636
57DAP/reference	1.12751	0.308

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.33535	0.048
17DAP/reference	0.91098	0.201
27DAP/reference	0.98412	0.554
39DAP/reference	1.25394	0.017
41DAP/reference	0.98807	0.557
42DAP/reference	1.06023	1
43DAP/reference	1.17416	0.215
47DAP/reference	1.13501	0.153
52DAP/reference	1.22933	0.014
57DAP/reference	0.98598	0.649

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.16732	0.079
17DAP/reference	1.01354	1
27DAP/reference	1.02194	1
39DAP/reference	0.93759	0.199
41DAP/reference	0.98851	0.682
42DAP/reference	0.94212	0.552
43DAP/reference	0.93884	0.334
47DAP/reference	0.90885	0.383
52DAP/reference	1.1274	0.683
57DAP/reference	0.99692	0.693

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.84051	1
26DAP/20DAP	1.06168	0.806
34DAP/26DAP	1.05758	1
51DAP/34DAP	1.1954	0.171
52DAP/51DAP	0.98662	1
53DAP/52DAP	0.99941	1
55DAP/53DAP	0.98084	0.838
57DAP/55DAP	1.18007	0.393
62DAP/57DAP	0.93205	0.994
68DAP/62DAP	0.79726	0.166
68DAP/14DAP	2.42095	0.041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.78046	0.022

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.49233	0.087
Mature Green Tomato/Ripe Tomato	1.03802	0.948
Immature Eggplant/Mature Eggplant	1.87339	0.05
Ripe Pepper/Ripe Tomato	4.9077	0.251
Mature Eggplant/Ripe Tomato	0.84996	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	0.85979	N/A
12-2/M82	N/A	N/A
12-4/M82	0.72725	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	0.81035	N/A
4-3-2/M82	1.03904	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	0.96473	N/A
7-2/M82	N/A	N/A
9-3-2/M82	0.86938	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.78374	0.247
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	1.45937	1
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.01399	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.80575	0.941
DC3000/delta hrp 6h	1.05166	1
DC3000/delta hrp 12h	1.23687	1
DC3000/delta hrp 24h	1.02579	0.743

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.8861	0.724
DC3000 delta B/DC3000 delta AB	0.77124	0.046

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.65121	0.328
Exp 36h	0.78873	0.589
Exp 60h	0.64501	0.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.96297	1
Var 0h	0.98602	1
Var 12h I row2-row1	0.83453	0.338
Var 12h NI row2-row1	1.01873	1
Var 36h I row2-row1	0.92797	0.805
Var 36h NI row2-row1	1.08558	1
Var 60h I row2-row1	1.1433	0.562
Var 60h NI row2-row1	1.10944	0.904
Time course 0hI-0hNI	0.90286	0.343
Time course 12hI-12hNI	0.99747	1
Time course 36hI-36hNI	0.88607	0.048
Time course 60hI-60hNI	0.39629	0.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94044	0.391
transgenic ySAMdc/azygous control (breaker)	1.07551	1
transgenic ySAMdc/azygous control (red)	0.97293	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.23106	0.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.09221	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.41392	0.093
Manapal/WT (break)	1.17701	1
Manapal/WT (red)	1.12389	0.413