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Expression of 1-1-2.2.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.102140.798
27DAP/17DAP0.929840.843
39DAP/27DAP1.734930.44
41DAP/39DAP0.718780.113
42DAP/41DAP1.617580.216
43DAP/42DAP0.877490.698
47DAP/43DAP0.900450.652
52DAP/47DAP0.789650.452
57DAP/52DAP1.18450.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.361990.023
17DAP/reference1.287670.037
27DAP/reference1.264050.103
39DAP/reference1.290510.068
41DAP/reference1.685890.013
42DAP/reference1.400560.001
43DAP/reference1.18580.152
47DAP/reference1.493210.001
52DAP/reference1.387810.018
57DAP/reference1.211330.496

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001921
27DAP/17DAP1.016790.957
39DAP/27DAP1.012710.799
41DAP/39DAP1.032210.781
42DAP/41DAP1.052440.753
43DAP/42DAP0.93470.28
47DAP/43DAP0.999620.998
52DAP/47DAP1.008871
57DAP/52DAP1.004271
57DAP/7DAP1.093131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872020.063
17DAP/reference0.836780.011
27DAP/reference0.938460.082
39DAP/reference0.899650.017
41DAP/reference0.913980.166
42DAP/reference0.859170.028
43DAP/reference0.977870.421
47DAP/reference0.894650.222
52DAP/reference0.904240.163
57DAP/reference0.907380.041

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.391610.077
17DAP/reference1.540150.01
27DAP/reference1.502090.018
39DAP/reference1.382860.019
41DAP/reference1.308660.011
42DAP/reference1.399490.012
43DAP/reference1.845130.017
47DAP/reference1.37240.048
52DAP/reference1.543380.006
57DAP/reference1.672810.02

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9610.455
17DAP/reference1.203520.269
27DAP/reference0.948020.337
39DAP/reference1.012310.819
41DAP/reference1.001770.754
42DAP/reference1.205940.134
43DAP/reference1.239180.233
47DAP/reference1.632090.009
52DAP/reference1.07050.705
57DAP/reference0.781010.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.89661
26DAP/20DAP1.004961
34DAP/26DAP0.923810.565
51DAP/34DAP0.904390.328
52DAP/51DAP0.977371
53DAP/52DAP0.958270.783
55DAP/53DAP1.085370.527
57DAP/55DAP0.911060.59
62DAP/57DAP0.986981
68DAP/62DAP1.217060.84
68DAP/14DAP0.879281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.282940.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.86150.377
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.23932N/A
Mature Eggplant/Ripe Tomato0.231050.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.657580.591
1-1-2/M821.127811
12-2/M821.655471
12-4/M820.938780.619
1-3/M821.209510.479
2-1-1/M820.919270.92
2-1/M821.02980.328
2-6/M821.069090.695
3-2/M821.14962N/A
4-1-1/M821.084351
4-1/M820.96986N/A
4-3-2/M821.52007N/A
4-3/M820.911041
5-3/M821.089881
6-2/M821.045031
6-3/M820.915491
7-1/M820.92940.803
7-2/M821.330711
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.559120.277
IL2-6/WTpooled0.721011
IL7-5/WTpooled0.680981
IL7-3/WTpooled1.709681
IL12-4/WTpooled0.980681
IL1-4/WTpooled1.373350.426
WT/WTpooled1.031161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.976841

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006431
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.384771
DC3000/delta hrp 24h1.113070.074

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.207980.042
DC3000 delta B/DC3000 delta AB1.145910.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005691
Var 0h0.447980.933
Var 12h I row2-row11.089430.272
Var 12h NI row2-row11.047641
Var 36h I row2-row10.840591
Var 36h NI row2-row10.82820.432
Var 60h I row2-row11.116790.562
Var 60h NI row2-row10.83120.483
Time course 0hI-0hNI0.984880.97
Time course 12hI-12hNI1.078990.633
Time course 36hI-36hNI1.15480.147
Time course 60hI-60hNI1.55990.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.98921
transgenic ySAMdc/azygous control (red)1.152940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.842150.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.102881

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.814060.299
Manapal/WT (red)0.376150.199