Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-2.2.2.20

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.13847	0.588
27DAP/17DAP	1.04821	0.91
39DAP/27DAP	1.24907	0.823
41DAP/39DAP	0.70616	0.096
42DAP/41DAP	0.85047	1
43DAP/42DAP	0.95036	0.867
47DAP/43DAP	0.92655	0.729
52DAP/47DAP	1.0583	0.997
57DAP/52DAP	1.05978	0.963

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94448	0.3
17DAP/reference	1.06734	0.27
27DAP/reference	1.02748	0.759
39DAP/reference	0.964	0.391
41DAP/reference	1.03906	0.451
42DAP/reference	0.97314	0.233
43DAP/reference	0.9558	0.302
47DAP/reference	1.00187	0.764
52DAP/reference	1.02578	1
57DAP/reference	0.98752	0.61

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.42722	0.038
27DAP/17DAP	1.03778	0.957
39DAP/27DAP	0.70863	0.043
41DAP/39DAP	1.06737	0.861
42DAP/41DAP	0.9203	0.508
43DAP/42DAP	0.74758	0.034
47DAP/43DAP	0.97686	0.886
52DAP/47DAP	1.29085	0.31
57DAP/52DAP	1.42405	0.32
57DAP/7DAP	0.92537	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00926	1
17DAP/reference	1.02627	1
27DAP/reference	0.96303	0.462
39DAP/reference	5.47867	0.012
41DAP/reference	2.07061	0.012
42DAP/reference	1.77384	0.059
43DAP/reference	0.92236	0.385
47DAP/reference	1.19218	0.413
52DAP/reference	0.88184	0.053
57DAP/reference	1.91178	0.571

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98344	0.736
17DAP/reference	1.00221	1
27DAP/reference	0.99029	0.642
39DAP/reference	0.9781	0.392
41DAP/reference	0.99491	0.615
42DAP/reference	0.86836	0.089
43DAP/reference	1.0679	0.569
47DAP/reference	0.78904	0.01
52DAP/reference	1.10608	0.036
57DAP/reference	1.00076	0.916

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90031	0.362
17DAP/reference	0.98453	0.763
27DAP/reference	0.81529	N/A
39DAP/reference	0.94093	0.544
41DAP/reference	1.16918	0.343
42DAP/reference	1.0402	0.68
43DAP/reference	1.23333	0.58
47DAP/reference	0.98325	0.538
52DAP/reference	0.87805	0.319
57DAP/reference	1.00462	0.753

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.0839	0.966
26DAP/20DAP	1.60321	0.13
34DAP/26DAP	1.14436	1
51DAP/34DAP	0.86457	0.472
52DAP/51DAP	1.7175	0.103
53DAP/52DAP	0.88923	0.386
55DAP/53DAP	1.24553	0.301
57DAP/55DAP	0.51665	0.053
62DAP/57DAP	1.04856	0.868
68DAP/62DAP	0.91167	0.641
68DAP/14DAP	1.36523	0.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.46869	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.0994	0.666
Mature Green Tomato/Ripe Tomato	1.57976	0.038
Immature Eggplant/Mature Eggplant	0.77498	0.1
Ripe Pepper/Ripe Tomato	0.75364	0.224
Mature Eggplant/Ripe Tomato	2.30274	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.94018	0.907
1-1-2/M82	1.06846	1
12-2/M82	N/A	N/A
12-4/M82	1.17432	N/A
1-3/M82	0.80851	0.378
2-1-1/M82	1.16916	N/A
2-1/M82	N/A	N/A
2-6/M82	1.21728	0.594
3-2/M82	N/A	N/A
4-1-1/M82	0.99419	N/A
4-1/M82	0.97853	N/A
4-3-2/M82	N/A	N/A
4-3/M82	0.89713	N/A
5-3/M82	0.89775	0.642
6-2/M82	0.94201	N/A
6-3/M82	N/A	N/A
7-1/M82	0.83196	N/A
7-2/M82	1.079	0.385
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.80678	N/A
IL12-4/WTpooled	0.97878	1
IL1-4/WTpooled	1.4797	N/A
WT/WTpooled	0.93998	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.94704	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.96804	1
DC3000/delta hrp 6h	1.03276	0.95
DC3000/delta hrp 12h	1.00528	1
DC3000/delta hrp 24h	0.98935	0.978

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.75709	0.024
DC3000 delta B/DC3000 delta AB	0.6778	0.024

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.87429	0.328
Exp 36h	0.9422	0.879
Exp 60h	0.76841	0.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.99761	1
Var 0h	0.95019	1
Var 12h I row2-row1	0.82196	0.39
Var 12h NI row2-row1	0.95896	0.906
Var 36h I row2-row1	1.02487	1
Var 36h NI row2-row1	1.1318	1
Var 60h I row2-row1	1.12863	0.562
Var 60h NI row2-row1	1.15529	0.904
Time course 0hI-0hNI	0.98317	0.958
Time course 12hI-12hNI	0.97156	0.808
Time course 36hI-36hNI	0.93504	0.194
Time course 60hI-60hNI	0.25715	0.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.10543	0.297
transgenic ySAMdc/azygous control (breaker)	0.80469	0.139
transgenic ySAMdc/azygous control (red)	0.92643	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.03159	0.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.48373	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.10365	0.105
Manapal/WT (break)	1.05171	1
Manapal/WT (red)	1.02742	1