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Expression of 1-1-2.3.11.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983340.839
27DAP/17DAP0.916590.783
39DAP/27DAP0.964670.652
41DAP/39DAP1.096430.289
42DAP/41DAP0.949611
43DAP/42DAP0.987340.93
47DAP/43DAP1.014550.979
52DAP/47DAP1.071020.876
57DAP/52DAP0.947730.687

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.02790.76
17DAP/reference0.999831
27DAP/reference0.962840.359
39DAP/reference1.010590.706
41DAP/reference1.058350.171
42DAP/reference1.017950.338
43DAP/reference1.028150.838
47DAP/reference0.982360.366
52DAP/reference1.10375N/A
57DAP/reference1.061690.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.980210.697
27DAP/17DAP1.14422N/A
39DAP/27DAP1.022610.779
41DAP/39DAP0.854490.747
42DAP/41DAP0.944780.674
43DAP/42DAP0.949550.367
47DAP/43DAP0.824990.554
52DAP/47DAP1.001131
57DAP/52DAP0.966620.572
57DAP/7DAP0.943131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95565N/A
17DAP/reference0.894750.056
27DAP/reference0.939490.013
39DAP/reference1.025150.333
41DAP/reference1.023730.767
42DAP/reference1.040710.308
43DAP/reference0.97740.385
47DAP/reference0.975840.293
52DAP/reference0.912730.106
57DAP/reference1.074070.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996030.93
17DAP/reference1.022070.628
27DAP/reference1.032520.757
39DAP/reference0.969170.14
41DAP/reference0.946930.169
42DAP/reference1.026280.826
43DAP/reference1.060240.276
47DAP/reference0.991150.559
52DAP/reference0.961030.171
57DAP/reference0.97360.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.904040.057
17DAP/reference0.979470.477
27DAP/reference0.940370.063
39DAP/reference0.996890.819
41DAP/reference0.933070.086
42DAP/reference0.926190.025
43DAP/reference0.92390.021
47DAP/reference0.988750.538
52DAP/reference0.936440.368
57DAP/reference0.912880.053

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.004071
26DAP/20DAP0.933570.512
34DAP/26DAP1.04210.542
51DAP/34DAP1.027390.795
52DAP/51DAP1.022490.783
53DAP/52DAP1.001371
55DAP/53DAP0.990860.864
57DAP/55DAP0.961480.854
62DAP/57DAP1.032040.833
68DAP/62DAP1.026961
68DAP/14DAP1.247730.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.987820.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.99517N/A
Mature Green Tomato/Ripe Tomato1.042620.752
Immature Eggplant/Mature Eggplant1.079971
Ripe Pepper/Ripe Tomato1.032031
Mature Eggplant/Ripe Tomato0.844641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.98020.961
1-1-2/M820.958560.958
12-2/M820.925010.955
12-4/M820.980660.619
1-3/M820.998931
2-1-1/M821.008641
2-1/M821.071341
2-6/M820.976781
3-2/M820.905830.455
4-1-1/M821.022491
4-1/M820.953051
4-3-2/M820.897170.698
4-3/M820.913851
5-3/M820.965611
6-2/M820.986931
6-3/M821.016931
7-1/M821.023781
7-2/M820.942120.796
9-3-2/M821.02521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.92932N/A
IL2-6/WTpooled1.088540.659
IL7-5/WTpooled1.40778N/A
IL7-3/WTpooled0.645190.294
IL12-4/WTpooled0.771620.71
IL1-4/WTpooled0.99341
WT/WTpooled0.913681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.48498N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024230.921
DC3000/delta hrp 6h1.362631
DC3000/delta hrp 12h0.93151
DC3000/delta hrp 24h1.061310.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.163630.057
DC3000 delta B/DC3000 delta AB1.097680.449

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991151
Var 0h1.171160.594
Var 12h I row2-row11.137130.204
Var 12h NI row2-row10.997341
Var 36h I row2-row11.277811
Var 36h NI row2-row11.012371
Var 60h I row2-row11.04261
Var 60h NI row2-row10.92230.516
Time course 0hI-0hNI1.034481
Time course 12hI-12hNI1.028870.803
Time course 36hI-36hNI0.933950.29
Time course 60hI-60hNI1.052130.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.905230.485
transgenic ySAMdc/azygous control (breaker)1.228661
transgenic ySAMdc/azygous control (red)1.281720.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996090.651

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.899970.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.716780.299
Manapal/WT (red)1.00191