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Expression of 1-1-2.3.14.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.254540.085
27DAP/17DAP0.890780.717
39DAP/27DAP1.068280.873
41DAP/39DAP1.113260.56
42DAP/41DAP1.017541
43DAP/42DAP1.054611
47DAP/43DAP1.555050.246
52DAP/47DAP1.498420.396
57DAP/52DAP1.087190.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.997990.756
17DAP/reference1.095080.342
27DAP/reference1.03970.58
39DAP/reference1.109010.524
41DAP/reference1.108290.029
42DAP/reference1.490230.001
43DAP/reference1.24474N/A
47DAP/reference1.526320.005
52DAP/reference1.80281N/A
57DAP/reference1.371250.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009341
27DAP/17DAP1.024730.942
39DAP/27DAP1.056870.565
41DAP/39DAP1.15560.799
42DAP/41DAP1.034110.879
43DAP/42DAP1.126760.052
47DAP/43DAP1.044920.848
52DAP/47DAP1.166920.474
57DAP/52DAP1.084230.518
57DAP/7DAP1.004931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.945410.224
17DAP/reference0.917120.094
27DAP/reference1.448150.012
39DAP/reference1.013580.909
41DAP/reference1.342910.011
42DAP/reference1.778810.006
43DAP/reference1.517850.048
47DAP/reference1.383390.029
52DAP/reference1.282280.009
57DAP/reference0.987480.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987350.786
17DAP/reference1.293470.033
27DAP/reference1.201780.48
39DAP/reference1.148870.316
41DAP/reference1.522740.047
42DAP/reference1.389750.019
43DAP/reference1.071430.977
47DAP/reference1.231980.013
52DAP/reference1.027910.789
57DAP/reference1.069290.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9040.268
17DAP/reference1.278010.289
27DAP/reference1.429540.015
39DAP/reference0.983250.544
41DAP/reference1.043770.605
42DAP/reference2.222960.007
43DAP/reference1.722330.016
47DAP/reference1.953620.006
52DAP/reference2.478370.027
57DAP/reference2.954580.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992421
26DAP/20DAP0.962030.512
34DAP/26DAP0.935570.735
51DAP/34DAP1.21550.079
52DAP/51DAP1.029340.565
53DAP/52DAP1.146520.643
55DAP/53DAP1.207410.614
57DAP/55DAP1.061680.975
62DAP/57DAP0.987760.994
68DAP/62DAP1.074270.912
68DAP/14DAP0.932791

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.048420.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.257320.113
Mature Green Tomato/Ripe Tomato0.695870.021
Immature Eggplant/Mature Eggplant1.036780.606
Ripe Pepper/Ripe Tomato0.388890.293
Mature Eggplant/Ripe Tomato0.381481

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014521
1-1-2/M820.83571
12-2/M820.907980.74
12-4/M821.084540.694
1-3/M821.077260.479
2-1-1/M820.927650.565
2-1/M820.952030.74
2-6/M820.952461
3-2/M821.01271
4-1-1/M821.071451
4-1/M821.057111
4-3-2/M821.04411
4-3/M820.89251
5-3/M820.957891
6-2/M820.933491
6-3/M820.977811
7-1/M821.007661
7-2/M820.919540.881
9-3-2/M821.173921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.01351
IL12-4/WTpooled1.165380.737
IL1-4/WTpooled1.17162N/A
WT/WTpooled1.000771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.100020.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.996191
DC3000/delta hrp 6h1.001790.95
DC3000/delta hrp 12h1.053321
DC3000/delta hrp 24h1.155340.296

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.046380.333
DC3000 delta B/DC3000 delta AB1.052050.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.901491
Exp 36h1.050841
Exp 60h1.146021

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983571
Var 0h0.62340.457
Var 12h I row2-row11.013750.692
Var 12h NI row2-row10.86110.546
Var 36h I row2-row10.976931
Var 36h NI row2-row10.902280.584
Var 60h I row2-row10.991540.832
Var 60h NI row2-row10.937580.932
Time course 0hI-0hNI0.963610.755
Time course 12hI-12hNI0.912140.116
Time course 36hI-36hNI0.976690.494
Time course 60hI-60hNI0.935520.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.912240.324
transgenic ySAMdc/azygous control (breaker)1.199070.248
transgenic ySAMdc/azygous control (red)0.982221

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.933160.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.690320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.670471
Manapal/WT (break)0.766941
Manapal/WT (red)1.519060.413