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Expression of 1-1-2.4.10.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.891180.511
27DAP/17DAP0.988360.963
39DAP/27DAP1.355010.219
41DAP/39DAP0.628190.045
42DAP/41DAP1.302770.679
43DAP/42DAP1.420350.424
47DAP/43DAP1.412070.4
52DAP/47DAP0.569340.066
57DAP/52DAP1.269950.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.999030.616
17DAP/reference0.904580.224
27DAP/reference1.563280.04
39DAP/reference1.494580.059
41DAP/reference1.446170.043
42DAP/reference1.494530.001
43DAP/reference1.349070.012
47DAP/reference1.944480.001
52DAP/reference1.226890.023
57DAP/reference1.555270.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.076350.326
27DAP/17DAP1.157010.576
39DAP/27DAP1.224750.394
41DAP/39DAP0.919940.729
42DAP/41DAP1.037520.927
43DAP/42DAP0.880270.321
47DAP/43DAP1.583410.055
52DAP/47DAP1.218540.749
57DAP/52DAP1.647760.055
57DAP/7DAP3.631780.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.09240.427
17DAP/reference1.107710.269
27DAP/reference1.349530.073
39DAP/reference0.869440.083
41DAP/reference0.718580.033
42DAP/reference0.760380.014
43DAP/reference0.787240.034
47DAP/reference1.198990.062
52DAP/reference0.69180.016
57DAP/reference0.911640.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901240.362
17DAP/reference0.971310.523
27DAP/reference0.99130.554
39DAP/reference0.698410.016
41DAP/reference0.698940.016
42DAP/reference1.303410.013
43DAP/reference1.12260.308
47DAP/reference1.628530.008
52DAP/reference0.777380.009
57DAP/reference0.743850.021

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.830090.077
17DAP/reference0.771210.139
27DAP/reference0.631690.039
39DAP/reference0.705080.01
41DAP/reference0.814390.107
42DAP/reference1.043620.923
43DAP/reference0.86290.12
47DAP/reference1.034681
52DAP/reference1.187730.233
57DAP/reference1.331010.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.331980.752
26DAP/20DAP1.431950.246
34DAP/26DAP0.790550.145
51DAP/34DAP1.222890.111
52DAP/51DAP0.821980.151
53DAP/52DAP1.002930.99
55DAP/53DAP1.270780.144
57DAP/55DAP1.522450.364
62DAP/57DAP1.329571
68DAP/62DAP0.778060.227
68DAP/14DAP0.754460.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.080140.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.095410.113
Mature Green Tomato/Ripe Tomato1.365930.034
Immature Eggplant/Mature Eggplant0.693060.062
Ripe Pepper/Ripe Tomato1.248291
Mature Eggplant/Ripe Tomato1.654631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.347410.526
1-1-2/M821.347731
12-2/M821.015941
12-4/M821.616761
1-3/M821.7140.26
2-1-1/M821.103480.764
2-1/M821.06423N/A
2-6/M821.213310.405
3-2/M820.90381
4-1-1/M821.038661
4-1/M820.66624N/A
4-3-2/M821.36780.246
4-3/M821.404491
5-3/M821.005751
6-2/M820.894231
6-3/M821.173981
7-1/M820.792070.408
7-2/M821.28017N/A
9-3-2/M821.100381

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.012881
IL2-6/WTpooled0.983371
IL7-5/WTpooled0.81881
IL7-3/WTpooled1.096970.362
IL12-4/WTpooled1.141990.595
IL1-4/WTpooled1.023961
WT/WTpooled0.978921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.934650.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057850.921
DC3000/delta hrp 6h0.840870.95
DC3000/delta hrp 12h1.341971
DC3000/delta hrp 24h0.790970.114

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08003N/A
DC3000 delta B/DC3000 delta AB1.120390.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.122021
Exp 36h0.980880.943
Exp 60h1.316040.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988591
Var 0h0.915731
Var 12h I row2-row11.050680.736
Var 12h NI row2-row11.101631
Var 36h I row2-row10.826930.805
Var 36h NI row2-row11.131971
Var 60h I row2-row10.782070.285
Var 60h NI row2-row11.087260.904
Time course 0hI-0hNI1.0480.662
Time course 12hI-12hNI0.916940.377
Time course 36hI-36hNI1.014890.975
Time course 60hI-60hNI1.687610.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083650.511
transgenic ySAMdc/azygous control (breaker)1.034680.178
transgenic ySAMdc/azygous control (red)1.020921

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.70960.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.827870.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.98841
Manapal/WT (break)1.002361
Manapal/WT (red)0.803770.183