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Expression of 1-1-2.4.13.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.147940.827
27DAP/17DAP1.976760.112
39DAP/27DAP1.009591
41DAP/39DAP1.092220.642
42DAP/41DAP1.428090.737
43DAP/42DAP2.177110.032
47DAP/43DAP0.820530.395
52DAP/47DAP1.056930.953
57DAP/52DAP0.770720.74

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.788730.035
17DAP/reference0.863270.065
27DAP/reference1.04890.794
39DAP/reference0.856580.047
41DAP/reference0.757830.031
42DAP/reference1.053220.231
43DAP/reference1.009131
47DAP/reference1.041040.666
52DAP/reference1.191220.062
57DAP/reference1.189510.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.99720.847
27DAP/17DAP1.563560.032
39DAP/27DAP1.03720.862
41DAP/39DAP0.668890.024
42DAP/41DAP1.095410.824
43DAP/42DAP1.939810.019
47DAP/43DAP1.112930.713
52DAP/47DAP1.325550.38
57DAP/52DAP1.626110.144
57DAP/7DAP1.914861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004020.758
17DAP/reference1.084010.328
27DAP/reference0.921830.185
39DAP/reference1.090510.21
41DAP/reference1.091260.314
42DAP/reference1.113480.308
43DAP/reference1.10690.212
47DAP/reference1.06050.659
52DAP/reference0.940810.363
57DAP/reference1.016130.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.858670.11
17DAP/reference1.00210.805
27DAP/reference0.779160.021
39DAP/reference0.964610.428
41DAP/reference0.910950.242
42DAP/reference0.908280.135
43DAP/reference0.970430.539
47DAP/reference0.905770.12
52DAP/reference0.888280.111
57DAP/reference0.837520.046

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01941
17DAP/reference1.075830.602
27DAP/reference1.126280.171
39DAP/reference1.067550.67
41DAP/reference0.894440.209
42DAP/reference1.132010.55
43DAP/reference0.927120.416
47DAP/reference1.157880.388
52DAP/reference1.338270.398
57DAP/reference0.962910.43

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.138680.945
26DAP/20DAP1.296760.493
34DAP/26DAP1.204170.304
51DAP/34DAP2.141130.032
52DAP/51DAP1.305030.065
53DAP/52DAP1.139840.517
55DAP/53DAP0.662070.028
57DAP/55DAP0.825330.282
62DAP/57DAP1.184920.723
68DAP/62DAP1.012110.885
68DAP/14DAP1.237020.077

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.344880.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.506350.117
Mature Green Tomato/Ripe Tomato0.39970.036
Immature Eggplant/Mature Eggplant0.94339N/A
Ripe Pepper/Ripe Tomato1.015081
Mature Eggplant/Ripe Tomato0.990481

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.825730.536
1-1-2/M821.138091
12-2/M821.225341
12-4/M820.650870.257
1-3/M821.011651
2-1-1/M820.825370.465
2-1/M821.034771
2-6/M821.074730.505
3-2/M820.960161
4-1-1/M821.011931
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.198061
5-3/M820.960841
6-2/M820.864490.497
6-3/M820.947751
7-1/M820.811110.452
7-2/M821.174971
9-3-2/M820.844030.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.942270.243
IL2-6/WTpooled1.065370.584
IL7-5/WTpooled1.05851
IL7-3/WTpooled0.838980.298
IL12-4/WTpooled0.978451
IL1-4/WTpooled0.961530.834
WT/WTpooled0.958911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.99851

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009531
DC3000/delta hrp 6h1.2031
DC3000/delta hrp 12h1.166851
DC3000/delta hrp 24h0.886950.33

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.891160.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983351
Var 0h1.029360.594
Var 12h I row2-row11.968530.443
Var 12h NI row2-row11.049161
Var 36h I row2-row11.27321
Var 36h NI row2-row10.706360.645
Var 60h I row2-row10.772110.287
Var 60h NI row2-row11.050771
Time course 0hI-0hNI1.011751
Time course 12hI-12hNI1.007170.868
Time course 36hI-36hNI0.788680.028
Time course 60hI-60hNI0.67290.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.886940.246
transgenic ySAMdc/azygous control (breaker)1.249160.248
transgenic ySAMdc/azygous control (red)2.214120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.951870.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.181351

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.239550.096
Manapal/WT (break)0.979881
Manapal/WT (red)0.863530.36