Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-2.4.15.4

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.51402	0.022
27DAP/17DAP	0.79227	0.597
39DAP/27DAP	1.86772	0.04
41DAP/39DAP	1.17003	0.663
42DAP/41DAP	0.54502	0.397
43DAP/42DAP	0.80489	0.801
47DAP/43DAP	1.02989	0.926
52DAP/47DAP	0.75106	0.388
57DAP/52DAP	1.16191	0.826

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.39001	0.031
17DAP/reference	0.96101	0.567
27DAP/reference	1.02047	0.966
39DAP/reference	0.82948	0.018
41DAP/reference	0.7295	0.026
42DAP/reference	0.88017	0.017
43DAP/reference	0.94082	0.155
47DAP/reference	0.95051	0.3
52DAP/reference	1.07376	0.663
57DAP/reference	1.252	0.02

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.31617	0.052
27DAP/17DAP	1.53378	0.119
39DAP/27DAP	0.99686	0.925
41DAP/39DAP	1.15932	0.623
42DAP/41DAP	0.85568	0.123
43DAP/42DAP	1.23539	0.025
47DAP/43DAP	1.17976	0.822
52DAP/47DAP	1.03712	0.93
57DAP/52DAP	1.37527	0.199
57DAP/7DAP	0.35086	0.219

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04856	0.961
17DAP/reference	0.81718	0.056
27DAP/reference	1.00339	0.656
39DAP/reference	1.1648	0.538
41DAP/reference	1.02728	0.811
42DAP/reference	0.97861	0.531
43DAP/reference	0.79632	0.069
47DAP/reference	1.1274	0.413
52DAP/reference	1.00318	0.74
57DAP/reference	0.94345	0.199

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.24752	0.131
17DAP/reference	0.85764	0.052
27DAP/reference	0.97723	0.519
39DAP/reference	0.82346	0.02
41DAP/reference	0.99672	0.631
42DAP/reference	0.89716	0.081
43DAP/reference	0.81914	0.027
47DAP/reference	0.84348	0.012
52DAP/reference	0.92485	0.143
57DAP/reference	0.89352	0.092

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0389	0.631
17DAP/reference	1.10617	0.585
27DAP/reference	1.01434	1
39DAP/reference	1.01096	0.819
41DAP/reference	0.99026	0.754
42DAP/reference	0.9959	0.816
43DAP/reference	0.98682	0.66
47DAP/reference	0.9122	0.109
52DAP/reference	1.11506	0.592
57DAP/reference	0.9137	0.136

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	3.23534	0.966
26DAP/20DAP	1.38125	0.549
34DAP/26DAP	1.30721	0.819
51DAP/34DAP	1.38729	0.883
52DAP/51DAP	1.12872	0.77
53DAP/52DAP	1.18395	0.678
55DAP/53DAP	1.01324	0.908
57DAP/55DAP	0.9727	0.789
62DAP/57DAP	0.99342	0.994
68DAP/62DAP	1.20188	0.413
68DAP/14DAP	1.15859	0.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.07322	0.865

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.88448	1
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.97288	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.08174	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.00308	N/A
1-3/M82	0.60117	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	1.14229	0.425
3-2/M82	N/A	N/A
4-1-1/M82	1.22071	N/A
4-1/M82	1.09056	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.96392	1
6-2/M82	1.09118	N/A
6-3/M82	0.58785	N/A
7-1/M82	N/A	N/A
7-2/M82	0.98287	0.599
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	1.35754	0.516
IL1-4/WTpooled	0.85788	0.834
WT/WTpooled	0.98977	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.23981	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.89066	0.734
DC3000/delta hrp 6h	1.06467	1
DC3000/delta hrp 12h	0.49971	1
DC3000/delta hrp 24h	5.92565	0.017

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.25271	0.06
DC3000 delta B/DC3000 delta AB	1.1567	0.292

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.0582	1
Exp 36h	1.14557	0.693
Exp 60h	1.13905	0.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.00009	1
Var 0h	1.98631	0.594
Var 12h I row2-row1	0.88767	0.627
Var 12h NI row2-row1	1.0033	1
Var 36h I row2-row1	0.97329	1
Var 36h NI row2-row1	1.24662	0.253
Var 60h I row2-row1	1.39473	0.543
Var 60h NI row2-row1	0.83974	0.932
Time course 0hI-0hNI	0.83301	0.076
Time course 12hI-12hNI	0.91695	0.204
Time course 36hI-36hNI	1.33721	0.005
Time course 60hI-60hNI	1.39199	0.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.01087	0.798
transgenic ySAMdc/azygous control (breaker)	1.23666	1
transgenic ySAMdc/azygous control (red)	1.10389	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.97413	0.418

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.98486	0.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.55137	0.307
Manapal/WT (break)	1.50699	0.381
Manapal/WT (red)	N/A	N/A