Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-2.4.3.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.39206	0.183
27DAP/17DAP	1.06558	0.874
39DAP/27DAP	1.38797	0.493
41DAP/39DAP	0.79754	0.407
42DAP/41DAP	0.95684	1
43DAP/42DAP	1.06098	1
47DAP/43DAP	1.41357	0.481
52DAP/47DAP	0.93107	0.793
57DAP/52DAP	0.8686	0.82

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.31897	0.265
17DAP/reference	1.27676	0.018
27DAP/reference	1.50559	0.071
39DAP/reference	0.98333	N/A
41DAP/reference	2.18548	0.014
42DAP/reference	N/A	N/A
43DAP/reference	N/A	N/A
47DAP/reference	N/A	N/A
52DAP/reference	0.521	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07022	0.99
27DAP/17DAP	0.91091	0.1
39DAP/27DAP	1.18269	0.654
41DAP/39DAP	1.12124	0.896
42DAP/41DAP	0.99573	0.734
43DAP/42DAP	1.16967	1
47DAP/43DAP	1.37792	0.331
52DAP/47DAP	1.22735	0.969
57DAP/52DAP	0.73931	0.294
57DAP/7DAP	0.49814	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6004	0.039
17DAP/reference	0.87919	0.253
27DAP/reference	1.0475	1
39DAP/reference	0.72442	0.011
41DAP/reference	0.83195	0.076
42DAP/reference	0.8095	0.09
43DAP/reference	0.87225	0.095
47DAP/reference	0.81225	0.383
52DAP/reference	0.89677	0.15
57DAP/reference	0.85382	0.08

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.75324	0.024
17DAP/reference	1.61159	0.898
27DAP/reference	0.70406	0.033
39DAP/reference	0.43884	N/A
41DAP/reference	0.82392	0.284
42DAP/reference	N/A	N/A
43DAP/reference	1.08602	1
47DAP/reference	1.04643	1
52DAP/reference	1.04424	N/A
57DAP/reference	0.76931	0.004

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6091	0.03
17DAP/reference	0.72045	0.239
27DAP/reference	N/A	N/A
39DAP/reference	1.08096	0.792
41DAP/reference	0.79298	0.07
42DAP/reference	0.74028	0.028
43DAP/reference	0.93251	0.545
47DAP/reference	1.28569	N/A
52DAP/reference	0.35234	N/A
57DAP/reference	0.61855	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.03344	N/A
26DAP/20DAP	0.96794	1
34DAP/26DAP	0.86841	0.404
51DAP/34DAP	1.08314	0.988
52DAP/51DAP	1.00981	1
53DAP/52DAP	1.3097	0.149
55DAP/53DAP	1.10192	0.855
57DAP/55DAP	1.01469	0.935
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.873	0.185
68DAP/14DAP	0.77226	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.20298	0.369

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.34283	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.10928	0.493
IL2-6/WTpooled	1.56535	0.395
IL7-5/WTpooled	0.99417	1
IL7-3/WTpooled	1.37443	0.362
IL12-4/WTpooled	1.02467	1
IL1-4/WTpooled	1.56539	1
WT/WTpooled	1.07976	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.82483	1
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	1.08934	0.821

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.32538	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.18081	0.307
Manapal/WT (break)	1.32432	0.13
Manapal/WT (red)	1.2072	1