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Expression of 1-1-3.1.12.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94730.652
27DAP/17DAP1.030470.911
39DAP/27DAP1.036541
41DAP/39DAP0.956990.795
42DAP/41DAP1.101390.844
43DAP/42DAP0.957560.877
47DAP/43DAP1.026560.999
52DAP/47DAP1.008240.971
57DAP/52DAP0.977790.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.201310.026
17DAP/reference1.0430.27
27DAP/reference1.021020.648
39DAP/reference1.043410.236
41DAP/reference1.107170.027
42DAP/reference1.310090.001
43DAP/reference1.06630.495
47DAP/reference1.164930.006
52DAP/reference1.193640.128
57DAP/reference1.152990.07

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.012160.975
27DAP/17DAP0.990490.919
39DAP/27DAP0.961320.52
41DAP/39DAP0.987461
42DAP/41DAP1.03540.8
43DAP/42DAP0.980650.709
47DAP/43DAP0.992060.971
52DAP/47DAP0.983230.93
57DAP/52DAP0.981880.75
57DAP/7DAP0.976261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.082640.399
17DAP/reference0.98760.253
27DAP/reference1.022440.197
39DAP/reference0.958380.146
41DAP/reference0.908890.058
42DAP/reference1.01041
43DAP/reference1.05720.256
47DAP/reference1.21440.155
52DAP/reference0.984410.477
57DAP/reference0.980750.411

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.195180.198
17DAP/reference1.339660.035
27DAP/reference1.44020.048
39DAP/reference1.369180.022
41DAP/reference1.265370.088
42DAP/reference1.541350.009
43DAP/reference1.231590.188
47DAP/reference1.422810.008
52DAP/reference1.253440.006
57DAP/reference1.401150.014

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083250.32
17DAP/reference1.229330.279
27DAP/reference0.984960.594
39DAP/reference1.026510.836
41DAP/reference0.978090.56
42DAP/reference1.33910.097
43DAP/reference1.284350.084
47DAP/reference1.182510.007
52DAP/reference1.146060.558
57DAP/reference1.287870.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.929541
26DAP/20DAP1.109190.562
34DAP/26DAP1.036211
51DAP/34DAP0.979570.816
52DAP/51DAP0.986691
53DAP/52DAP1.053860.517
55DAP/53DAP0.951510.43
57DAP/55DAP1.082170.779
62DAP/57DAP1.015160.935
68DAP/62DAP0.765540.227
68DAP/14DAP0.911451

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.127940.151

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.106960.176
Mature Green Tomato/Ripe Tomato1.074950.478
Immature Eggplant/Mature Eggplant1.030270.606
Ripe Pepper/Ripe Tomato1.465761
Mature Eggplant/Ripe Tomato1.438570.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.012461
1-1-2/M820.944631
12-2/M820.929470.862
12-4/M820.983720.619
1-3/M821.055211
2-1-1/M820.970940.465
2-1/M821.018781
2-6/M820.950311
3-2/M821.024891
4-1-1/M821.008191
4-1/M821.041580.853
4-3-2/M821.016611
4-3/M820.974321
5-3/M820.981211
6-2/M821.023931
6-3/M821.110291
7-1/M821.00831
7-2/M820.973910.881
9-3-2/M820.979991

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.01514N/A
IL2-6/WTpooled1.124260.659
IL7-5/WTpooled0.89923N/A
IL7-3/WTpooled1.229861
IL12-4/WTpooled0.813280.554
IL1-4/WTpooled1.151090.421
WT/WTpooled1.030291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.248240.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.104550.629
DC3000/delta hrp 6h0.939430.95
DC3000/delta hrp 12h1.232111
DC3000/delta hrp 24h1.038710.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.982290.955
DC3000 delta B/DC3000 delta AB0.920010.279

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.798841
Exp 36h1.108271
Exp 60h0.924810.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988871
Var 0h0.50920.782
Var 12h I row2-row10.9070.627
Var 12h NI row2-row10.955530.82
Var 36h I row2-row11.049671
Var 36h NI row2-row10.873740.329
Var 60h I row2-row11.087460.562
Var 60h NI row2-row11.055151
Time course 0hI-0hNI0.962750.711
Time course 12hI-12hNI1.037940.56
Time course 36hI-36hNI1.181150.011
Time course 60hI-60hNI1.062340.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958640.567
transgenic ySAMdc/azygous control (breaker)1.087391
transgenic ySAMdc/azygous control (red)1.203490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.067160.096

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.180941

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.962231
Manapal/WT (break)1.263710.381
Manapal/WT (red)1.096860.413