Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-3.1.17.16

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.83424	0.303
27DAP/17DAP	0.97892	0.923
39DAP/27DAP	0.83198	0.549
41DAP/39DAP	1.23339	0.569
42DAP/41DAP	1.13743	0.82
43DAP/42DAP	1.11849	1
47DAP/43DAP	1.28077	0.873
52DAP/47DAP	0.82843	0.554
57DAP/52DAP	1.05519	0.988

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96902	0.589
17DAP/reference	1.17437	0.457
27DAP/reference	1.04421	0.867
39DAP/reference	1.50966	0.066
41DAP/reference	1.13321	0.062
42DAP/reference	0.98688	0.455
43DAP/reference	0.8454	0.045
47DAP/reference	0.92553	0.224
52DAP/reference	0.96113	0.438
57DAP/reference	0.84654	0.131

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.21653	0.071
27DAP/17DAP	1.17727	0.246
39DAP/27DAP	1.0049	1
41DAP/39DAP	0.94599	0.885
42DAP/41DAP	0.85486	0.292
43DAP/42DAP	1.17709	0.351
47DAP/43DAP	0.95493	0.815
52DAP/47DAP	0.93764	0.778
57DAP/52DAP	1.01028	1
57DAP/7DAP	1.67525	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.67449	0.082
17DAP/reference	0.87528	0.082
27DAP/reference	0.87647	0.039
39DAP/reference	0.70771	0.031
41DAP/reference	0.766	0.16
42DAP/reference	0.90931	0.304
43DAP/reference	1.0473	1
47DAP/reference	0.84665	0.293
52DAP/reference	0.85477	0.077
57DAP/reference	0.78225	0.032

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94663	0.655
17DAP/reference	0.61867	N/A
27DAP/reference	0.9894	0.619
39DAP/reference	0.89256	0.314
41DAP/reference	1.12256	0.705
42DAP/reference	1.0176	0.723
43DAP/reference	1.28883	0.255
47DAP/reference	1.0725	0.256
52DAP/reference	0.8474	0.203
57DAP/reference	0.72146	0.18

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80141	0.036
17DAP/reference	1.05171	0.824
27DAP/reference	0.90368	0.097
39DAP/reference	0.93393	0.246
41DAP/reference	0.9336	0.293
42DAP/reference	1.22492	0.556
43DAP/reference	1.1585	0.646
47DAP/reference	1.1677	0.68
52DAP/reference	1.06324	0.838
57DAP/reference	1.086	0.924

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.87819	1
26DAP/20DAP	1.02574	1
34DAP/26DAP	1.08397	1
51DAP/34DAP	0.93377	0.681
52DAP/51DAP	0.84859	1
53DAP/52DAP	0.98994	0.96
55DAP/53DAP	1.15246	0.566
57DAP/55DAP	1.07454	0.927
62DAP/57DAP	1.06367	1
68DAP/62DAP	1.82876	0.682
68DAP/14DAP	1.6216	0.042

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.02813	0.954

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.65641	0.06
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	0.48638	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.12658	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	0.74539	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	1.34153	0.785
IL1-4/WTpooled	0.95842	N/A
WT/WTpooled	1.2622	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.78122	0.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.07917	1
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.14294	1
DC3000/delta hrp 24h	1.18591	1

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	0.5548	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.99182	1
Var 0h	0.78121	0.594
Var 12h I row2-row1	0.94083	0.467
Var 12h NI row2-row1	1.03359	1
Var 36h I row2-row1	0.76443	1
Var 36h NI row2-row1	0.77178	0.61
Var 60h I row2-row1	0.82757	0.293
Var 60h NI row2-row1	1.07664	0.904
Time course 0hI-0hNI	1.02317	0.867
Time course 12hI-12hNI	1.02306	0.818
Time course 36hI-36hNI	1.02428	0.58
Time course 60hI-60hNI	0.91637	0.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	0.8862	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.2362	0.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.99905	1
Manapal/WT (break)	1.27242	0.123
Manapal/WT (red)	0.74722	0.181