Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-3.1.17.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.82533	0.211
27DAP/17DAP	1.42211	0.627
39DAP/27DAP	1.10982	1
41DAP/39DAP	1.19074	0.624
42DAP/41DAP	0.77927	0.774
43DAP/42DAP	1.07469	0.985
47DAP/43DAP	1.11293	0.769
52DAP/47DAP	1.52004	0.228
57DAP/52DAP	1.09635	0.969

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02293	0.76
17DAP/reference	1.10618	0.039
27DAP/reference	1.06719	0.33
39DAP/reference	1.10863	0.076
41DAP/reference	1.11713	0.02
42DAP/reference	0.98867	0.372
43DAP/reference	1.06278	0.175
47DAP/reference	1.05596	0.096
52DAP/reference	1.02515	0.991
57DAP/reference	1.03792	0.582

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.92005	0.35
27DAP/17DAP	0.97044	0.878
39DAP/27DAP	1.02333	0.832
41DAP/39DAP	1.16747	0.735
42DAP/41DAP	0.98419	0.787
43DAP/42DAP	0.8741	0.036
47DAP/43DAP	0.98305	0.909
52DAP/47DAP	0.88783	0.251
57DAP/52DAP	0.86515	0.387
57DAP/7DAP	0.65106	0.219

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.8878	0.088
17DAP/reference	0.81218	0.019
27DAP/reference	0.96842	0.348
39DAP/reference	0.91745	0.049
41DAP/reference	0.96034	0.341
42DAP/reference	0.95202	0.32
43DAP/reference	0.73027	0.01
47DAP/reference	0.83242	0.04
52DAP/reference	0.86362	0.049
57DAP/reference	0.92033	0.045

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06905	0.397
17DAP/reference	1.00062	0.83
27DAP/reference	0.96631	0.467
39DAP/reference	1.06761	0.489
41DAP/reference	0.9311	0.188
42DAP/reference	0.98323	0.534
43DAP/reference	1.19709	0.152
47DAP/reference	1.00272	1
52DAP/reference	1.07066	0.368
57DAP/reference	0.9887	0.68

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85739	0.119
17DAP/reference	0.96804	0.571
27DAP/reference	0.82354	0.051
39DAP/reference	0.89364	0.122
41DAP/reference	0.85083	0.022
42DAP/reference	0.87196	0.087
43DAP/reference	0.79691	0.031
47DAP/reference	0.98657	0.558
52DAP/reference	0.86784	0.211
57DAP/reference	0.91832	0.152

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.1043	0.966
26DAP/20DAP	1.87181	0.097
34DAP/26DAP	0.98696	0.998
51DAP/34DAP	0.64905	0.054
52DAP/51DAP	0.917	1
53DAP/52DAP	0.75535	0.111
55DAP/53DAP	0.63681	0.023
57DAP/55DAP	1.69951	0.779
62DAP/57DAP	1.46115	0.007
68DAP/62DAP	1.25837	0.866
68DAP/14DAP	0.9728	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.99328	0.014

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.6546	0.058
Mature Green Tomato/Ripe Tomato	1.53262	0.016
Immature Eggplant/Mature Eggplant	0.80622	0.074
Ripe Pepper/Ripe Tomato	0.39283	0.224
Mature Eggplant/Ripe Tomato	1.65631	0.268

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.85856	0.841
1-1-2/M82	0.68108	1
12-2/M82	1.06827	1
12-4/M82	0.92411	1
1-3/M82	0.66841	0.378
2-1-1/M82	1.20743	0.375
2-1/M82	1.38594	1
2-6/M82	0.80414	1
3-2/M82	1.04567	N/A
4-1-1/M82	0.78248	0.962
4-1/M82	0.98637	1
4-3-2/M82	0.77852	N/A
4-3/M82	0.86316	0.72
5-3/M82	1.15849	0.572
6-2/M82	N/A	N/A
6-3/M82	1.11668	N/A
7-1/M82	N/A	N/A
7-2/M82	0.82775	0.796
9-3-2/M82	0.96696	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	0.78751	1
IL7-5/WTpooled	0.69737	N/A
IL7-3/WTpooled	1.05455	1
IL12-4/WTpooled	1.14988	0.553
IL1-4/WTpooled	0.82792	0.444
WT/WTpooled	1.0282	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.05293	0.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.07592	0.921
DC3000/delta hrp 6h	0.90955	0.95
DC3000/delta hrp 12h	1.09241	1
DC3000/delta hrp 24h	0.88422	0.241

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.89138	N/A
DC3000 delta B/DC3000 delta AB	1.1539	0.457

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.73949	1
Exp 36h	1.30964	0.693
Exp 60h	1.20912	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.99186	1
Var 0h	0.7695	0.933
Var 12h I row2-row1	1.34656	0.544
Var 12h NI row2-row1	1.10788	1
Var 36h I row2-row1	1.00511	1
Var 36h NI row2-row1	0.87714	0.706
Var 60h I row2-row1	0.91084	0.439
Var 60h NI row2-row1	1.05034	1
Time course 0hI-0hNI	0.89617	0.349
Time course 12hI-12hNI	1.02525	0.786
Time course 36hI-36hNI	1.5039	0.006
Time course 60hI-60hNI	1.36764	0.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.97654	0.567
transgenic ySAMdc/azygous control (breaker)	2.4186	0.172
transgenic ySAMdc/azygous control (red)	1.2038	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.90996	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.92545	1
Manapal/WT (break)	0.94946	1
Manapal/WT (red)	1.02057	1