TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-3.1.3.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.911250.046
27DAP/17DAP1.095860.873
39DAP/27DAP2.035610.042
41DAP/39DAP0.757120.158
42DAP/41DAP2.172740.502
43DAP/42DAP1.320370.956
47DAP/43DAP0.851170.484
52DAP/47DAP1.091240.991
57DAP/52DAP0.761440.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.768790.024
17DAP/reference0.917790.194
27DAP/reference1.030380.782
39DAP/reference0.837560.088
41DAP/reference0.840050.01
42DAP/reference1.252810.029
43DAP/reference1.024020.861
47DAP/reference1.085961
52DAP/reference0.778410.069
57DAP/reference0.819120.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.93920.036
27DAP/17DAP0.854350.312
39DAP/27DAP0.949430.66
41DAP/39DAP0.945010.849
42DAP/41DAP0.999060.841
43DAP/42DAP1.829330.014
47DAP/43DAP1.052880.827
52DAP/47DAP0.784320.101
57DAP/52DAP0.617890.067
57DAP/7DAP1.10851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092030.472
17DAP/reference1.069130.018
27DAP/reference1.032060.551
39DAP/reference2.15710.005
41DAP/reference1.296170.034
42DAP/reference2.492390.007
43DAP/reference3.368910.006
47DAP/reference3.822720.014
52DAP/reference2.749340.007
57DAP/reference2.899960.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.686220.006
17DAP/reference1.066250.961
27DAP/reference1.045560.988
39DAP/reference1.314690.182
41DAP/reference0.991350.615
42DAP/reference1.529390.008
43DAP/reference0.97060.561
47DAP/reference1.576760.008
52DAP/reference1.023420.168
57DAP/reference1.115770.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832580.033
17DAP/reference1.185680.17
27DAP/reference1.214560.029
39DAP/reference1.242960.036
41DAP/reference1.259320.015
42DAP/reference2.360970.007
43DAP/reference2.610760.007
47DAP/reference1.419310.008
52DAP/reference1.756040.041
57DAP/reference1.3590.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.896341
26DAP/20DAP1.958110.099
34DAP/26DAP1.022211
51DAP/34DAP0.741940.066
52DAP/51DAP0.895981
53DAP/52DAP1.006760.961
55DAP/53DAP0.849230.181
57DAP/55DAP0.841190.327
62DAP/57DAP1.044851
68DAP/62DAP0.675130.177
68DAP/14DAP0.664780.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.3880.064

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.958470.648
Mature Green Tomato/Ripe Tomato1.457960.095
Immature Eggplant/Mature Eggplant0.919510.366
Ripe Pepper/Ripe Tomato2.097480.258
Mature Eggplant/Ripe Tomato2.820930.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.084441
1-1-2/M820.95228N/A
12-2/M820.934040.955
12-4/M821.221751
1-3/M821.111410.479
2-1-1/M820.884320.465
2-1/M820.582530.322
2-6/M820.973371
3-2/M821.187240.388
4-1-1/M821.174431
4-1/M820.8724N/A
4-3-2/M821.871340.262
4-3/M821.058811
5-3/M820.992841
6-2/M821.105451
6-3/M821.065651
7-1/M820.999091
7-2/M821.053831
9-3-2/M821.24202N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.904260.321
IL2-6/WTpooled1.006791
IL7-5/WTpooled0.825811
IL7-3/WTpooled1.036471
IL12-4/WTpooled0.79280.71
IL1-4/WTpooled1.06071
WT/WTpooled0.970021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.037511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.998231
DC3000/delta hrp 6h1.289181
DC3000/delta hrp 12h1.156771
DC3000/delta hrp 24h1.118610.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.982871
DC3000 delta B/DC3000 delta AB1.011150.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.198021
Exp 36h0.955960.943
Exp 60h1.174121

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.151330.421
Var 12h I row2-row10.865770.39
Var 12h NI row2-row11.166821
Var 36h I row2-row11.216310.368
Var 36h NI row2-row10.979720.852
Var 60h I row2-row10.948120.952
Var 60h NI row2-row11.268780.904
Time course 0hI-0hNI1.154110.63
Time course 12hI-12hNI0.988560.991
Time course 36hI-36hNI0.82250.187
Time course 60hI-60hNI1.920420.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.81680.377
transgenic ySAMdc/azygous control (breaker)0.267450.119
transgenic ySAMdc/azygous control (red)1.080460.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.209880.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.148270.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.969511
Manapal/WT (break)0.96381
Manapal/WT (red)0.497990.181