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Expression of 1-1-3.2.1.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.863560.153
27DAP/17DAP0.846750.579
39DAP/27DAP1.116330.725
41DAP/39DAP1.062940.722
42DAP/41DAP1.059940.949
43DAP/42DAP0.903160.822
47DAP/43DAP0.838030.499
52DAP/47DAP1.199710.699
57DAP/52DAP0.910490.81

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.062430.587
17DAP/reference1.03460.166
27DAP/reference0.921790.152
39DAP/reference0.972260.541
41DAP/reference0.979050.667
42DAP/reference1.013410.731
43DAP/reference1.105170.047
47DAP/reference0.917150.019
52DAP/reference0.891780.084
57DAP/reference0.928770.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025730.642
27DAP/17DAP1.01410.969
39DAP/27DAP1.008270.854
41DAP/39DAP1.014650.887
42DAP/41DAP1.056460.663
43DAP/42DAP0.934290.216
47DAP/43DAP1.03230.865
52DAP/47DAP0.979670.905
57DAP/52DAP1.031660.911
57DAP/7DAP1.211870.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.240920.045
17DAP/reference1.062750.297
27DAP/reference1.029420.551
39DAP/reference1.048290.107
41DAP/reference0.96990.284
42DAP/reference0.983070.458
43DAP/reference0.951140.033
47DAP/reference1.048020.571
52DAP/reference1.079010.352
57DAP/reference0.965840.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116850.049
17DAP/reference1.213160.043
27DAP/reference1.059520.412
39DAP/reference1.027420.912
41DAP/reference0.990380.57
42DAP/reference0.95240.169
43DAP/reference1.03030.785
47DAP/reference1.006211
52DAP/reference0.983770.433
57DAP/reference1.031660.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139330.066
17DAP/reference1.048960.258
27DAP/reference0.971230.092
39DAP/reference0.969220.271
41DAP/reference0.972550.107
42DAP/reference1.026880.701
43DAP/reference0.973650.449
47DAP/reference1.087240.61
52DAP/reference1.021450.904
57DAP/reference0.736290.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.0310.966
26DAP/20DAP0.942721
34DAP/26DAP0.908570.596
51DAP/34DAP0.811610.078
52DAP/51DAP0.958031
53DAP/52DAP1.042140.806
55DAP/53DAP0.941750.619
57DAP/55DAP1.075510.626
62DAP/57DAP1.2390.767
68DAP/62DAP0.766590.505
68DAP/14DAP1.020891

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.155130.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.027340.666
Mature Green Tomato/Ripe Tomato1.153330.881
Immature Eggplant/Mature Eggplant1.1010.267
Ripe Pepper/Ripe Tomato1.19821
Mature Eggplant/Ripe Tomato1.815870.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.927960.944
1-1-2/M820.955271
12-2/M821.007251
12-4/M820.953831
1-3/M821.050050.479
2-1-1/M820.923780.465
2-1/M820.805970.74
2-6/M821.083870.594
3-2/M820.955631
4-1-1/M820.997781
4-1/M820.944821
4-3-2/M821.055381
4-3/M821.08571
5-3/M821.102211
6-2/M820.982461
6-3/M821.04031
7-1/M821.00363N/A
7-2/M820.996571
9-3-2/M821.033821

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71944N/A
IL2-6/WTpooled0.873350.473
IL7-5/WTpooled0.87378N/A
IL7-3/WTpooled0.866111
IL12-4/WTpooled0.880650.581
IL1-4/WTpooled1.059891
WT/WTpooled0.927241

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.991661

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.972531
DC3000/delta hrp 6h1.026780.95
DC3000/delta hrp 12h0.966051
DC3000/delta hrp 24h1.015430.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.125830.042
DC3000 delta B/DC3000 delta AB1.099770.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.799991
Exp 36h1.147011
Exp 60h1.034021

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974671
Var 0h0.960260.782
Var 12h I row2-row11.305410.654
Var 12h NI row2-row11.151351
Var 36h I row2-row11.130720.283
Var 36h NI row2-row10.825260.478
Var 60h I row2-row11.054680.562
Var 60h NI row2-row11.085871
Time course 0hI-0hNI0.926870.287
Time course 12hI-12hNI0.997651
Time course 36hI-36hNI1.183340.19
Time course 60hI-60hNI1.401070.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.722630.315
transgenic ySAMdc/azygous control (breaker)1.308860.172
transgenic ySAMdc/azygous control (red)1.447490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.082450.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.753080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.718421
Manapal/WT (break)1.366641
Manapal/WT (red)1.139440.413