TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-3.2.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.850240.347
27DAP/17DAP1.084971
39DAP/27DAP1.221560.593
41DAP/39DAP1.084480.676
42DAP/41DAP1.109260.945
43DAP/42DAP1.023440.937
47DAP/43DAP0.887140.618
52DAP/47DAP1.337110.538
57DAP/52DAP0.884370.86

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.006431
17DAP/reference0.976550.474
27DAP/reference0.932860.114
39DAP/reference0.963830.36
41DAP/reference0.966610.341
42DAP/reference0.938340.017
43DAP/reference1.004241
47DAP/reference0.979880.3
52DAP/reference0.9430.275
57DAP/reference0.951610.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892760.26
27DAP/17DAP1.003111
39DAP/27DAP1.265560.285
41DAP/39DAP0.891370.512
42DAP/41DAP1.077630.601
43DAP/42DAP1.429050.034
47DAP/43DAP1.038120.833
52DAP/47DAP0.884870.338
57DAP/52DAP0.974510.68
57DAP/7DAP1.068371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.25430.112
17DAP/reference1.349580.049
27DAP/reference1.151650.131
39DAP/reference0.986660.552
41DAP/reference0.909650.103
42DAP/reference0.819320.055
43DAP/reference1.108540.923
47DAP/reference0.919840.222
52DAP/reference1.367720.081
57DAP/reference1.061830.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97650.706
17DAP/reference0.997010.786
27DAP/reference0.860550.173
39DAP/reference0.955480.281
41DAP/reference0.809810.087
42DAP/reference0.91620.035
43DAP/reference0.935390.361
47DAP/reference0.912430.073
52DAP/reference0.905790.015
57DAP/reference0.973850.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.074090.709
17DAP/reference0.979140.658
27DAP/reference1.18780.392
39DAP/reference1.267470.042
41DAP/reference1.067130.674
42DAP/reference1.000421
43DAP/reference1.167320.32
47DAP/reference0.881050.019
52DAP/reference1.693470.179
57DAP/reference1.39190.581

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.031990.966
26DAP/20DAP0.909150.512
34DAP/26DAP0.888450.627
51DAP/34DAP0.817440.22
52DAP/51DAP1.062560.742
53DAP/52DAP0.895450.489
55DAP/53DAP0.92210.619
57DAP/55DAP1.006780.94
62DAP/57DAP1.185710.767
68DAP/62DAP1.04190.899
68DAP/14DAP0.97511

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.100540.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.578220.058
Mature Green Tomato/Ripe Tomato0.963970.66
Immature Eggplant/Mature Eggplant1.147580.174
Ripe Pepper/Ripe Tomato0.837651
Mature Eggplant/Ripe Tomato1.204070.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.066760.877
1-1-2/M820.965360.958
12-2/M821.11436N/A
12-4/M820.881690.619
1-3/M821.131361
2-1-1/M821.058361
2-1/M820.96320.74
2-6/M820.937741
3-2/M820.93014N/A
4-1-1/M821.095650.968
4-1/M821.182150.283
4-3-2/M820.956311
4-3/M821.064461
5-3/M821.10151
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.01183N/A
7-2/M820.978661
9-3-2/M820.964541

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.003941
IL7-5/WTpooled1.30138N/A
IL7-3/WTpooled1.104961
IL12-4/WTpooled0.991861
IL1-4/WTpooled1.198290.426
WT/WTpooled0.954931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.055511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024470.921
DC3000/delta hrp 6h1.196071
DC3000/delta hrp 12h0.812491
DC3000/delta hrp 24h1.89040.029

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.090370.556
DC3000 delta B/DC3000 delta AB1.217620.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953951
Exp 36h1.063081
Exp 60h1.132351

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004031
Var 0h0.946331
Var 12h I row2-row10.876130.418
Var 12h NI row2-row11.050721
Var 36h I row2-row11.065360.339
Var 36h NI row2-row11.014131
Var 60h I row2-row10.92540.292
Var 60h NI row2-row10.869230.483
Time course 0hI-0hNI1.050540.764
Time course 12hI-12hNI0.963120.739
Time course 36hI-36hNI1.144080.016
Time course 60hI-60hNI1.466140.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961870.485
transgenic ySAMdc/azygous control (breaker)1.075961
transgenic ySAMdc/azygous control (red)1.151840.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.150070.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.710730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.685320.09
Manapal/WT (break)1.598680.183
Manapal/WT (red)2.197540.133