Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-3.2.17.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.22925	0.786
27DAP/17DAP	1.0114	0.927
39DAP/27DAP	1.2171	0.774
41DAP/39DAP	1.41784	0.691
42DAP/41DAP	0.82397	1
43DAP/42DAP	1.09445	1
47DAP/43DAP	1.35575	0.459
52DAP/47DAP	1.13835	0.861
57DAP/52DAP	1.27273	0.585

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94053	0.231
17DAP/reference	1.22535	0.02
27DAP/reference	1.00794	0.904
39DAP/reference	1.24744	0.016
41DAP/reference	1.36989	0.015
42DAP/reference	0.95146	0.202
43DAP/reference	1.07316	0.425
47DAP/reference	0.95297	0.3
52DAP/reference	0.81361	0.05
57DAP/reference	0.87253	0.014

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.88222	0.484
27DAP/17DAP	1.12109	0.576
39DAP/27DAP	1.22485	0.514
41DAP/39DAP	0.98391	0.885
42DAP/41DAP	0.90107	0.429
43DAP/42DAP	0.96586	0.729
47DAP/43DAP	0.77479	0.153
52DAP/47DAP	1.00427	0.925
57DAP/52DAP	0.77869	0.094
57DAP/7DAP	0.84293	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92518	0.27
17DAP/reference	0.92962	0.295
27DAP/reference	1.04468	0.804
39DAP/reference	0.99276	0.552
41DAP/reference	1.00172	0.741
42DAP/reference	1.10785	0.174
43DAP/reference	1.35082	0.07
47DAP/reference	0.93834	0.293
52DAP/reference	1.07737	0.491
57DAP/reference	0.98482	0.53

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20047	0.39
17DAP/reference	1.16418	0.12
27DAP/reference	0.88898	0.119
39DAP/reference	1.01726	0.702
41DAP/reference	0.82446	0.047
42DAP/reference	0.86436	0.089
43DAP/reference	1.24876	0.276
47DAP/reference	1.01302	1
52DAP/reference	1.06858	0.596
57DAP/reference	1.25418	0.286

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91687	0.311
17DAP/reference	0.95446	0.519
27DAP/reference	1.10925	0.575
39DAP/reference	1.20041	0.091
41DAP/reference	1.11325	0.57
42DAP/reference	0.89016	0.361
43DAP/reference	0.94062	0.432
47DAP/reference	1.10145	0.48
52DAP/reference	0.82778	0.216
57DAP/reference	0.5949	0.017

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.48708	0.966
26DAP/20DAP	0.87231	0.317
34DAP/26DAP	1.14907	1
51DAP/34DAP	0.64811	0.41
52DAP/51DAP	1.35148	N/A
53DAP/52DAP	1.10531	0.537
55DAP/53DAP	1.08214	0.982
57DAP/55DAP	0.96089	0.765
62DAP/57DAP	1.15995	0.217
68DAP/62DAP	0.57883	0.053
68DAP/14DAP	0.57758	0.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.6555	0.059

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	2.42482	0.038
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.87929	N/A
1-1-2/M82	0.88859	N/A
12-2/M82	N/A	N/A
12-4/M82	1.71501	N/A
1-3/M82	0.50955	N/A
2-1-1/M82	1.55946	N/A
2-1/M82	N/A	N/A
2-6/M82	1.06622	0.695
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	1.07982	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	0.91096	0.642
6-2/M82	N/A	N/A
6-3/M82	1.13779	N/A
7-1/M82	N/A	N/A
7-2/M82	0.84461	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.56751	0.277
IL2-6/WTpooled	0.73655	0.473
IL7-5/WTpooled	0.70376	1
IL7-3/WTpooled	1.61522	0.362
IL12-4/WTpooled	0.93028	1
IL1-4/WTpooled	1.2786	0.426
WT/WTpooled	1.07679	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.00318	1
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.21659	1
DC3000/delta hrp 24h	1.25386	0.308

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.56117	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.91293	N/A
Var 0h	1.02925	1
Var 12h I row2-row1	1.04358	N/A
Var 12h NI row2-row1	0.82647	0.627
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	0.90766	N/A
Var 60h I row2-row1	0.93374	0.952
Var 60h NI row2-row1	1.71755	0.904
Time course 0hI-0hNI	2.16442	0.662
Time course 12hI-12hNI	1.28775	1
Time course 36hI-36hNI	1.07052	0.799
Time course 60hI-60hNI	1.27397	0.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	1.49342	0.248
transgenic ySAMdc/azygous control (red)	1.64454	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.15755	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.17604	1
Manapal/WT (break)	1.13355	1
Manapal/WT (red)	1.08892	1