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Expression of 1-1-3.2.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.418190.365
27DAP/17DAP1.183850.809
39DAP/27DAP0.960580.682
41DAP/39DAP1.087450.797
42DAP/41DAP1.147650.876
43DAP/42DAP1.173680.816
47DAP/43DAP1.263740.569
52DAP/47DAP0.881120.654
57DAP/52DAP1.215230.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015381
17DAP/reference1.12540.166
27DAP/reference1.052520.696
39DAP/reference1.097290.197
41DAP/reference1.134830.171
42DAP/reference1.05260.632
43DAP/reference0.978110.675
47DAP/reference1.040031
52DAP/reference0.996920.668
57DAP/reference0.823310.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.899930.336
27DAP/17DAP0.98980.943
39DAP/27DAP1.170030.275
41DAP/39DAP1.039410.868
42DAP/41DAP1.032380.886
43DAP/42DAP1.006560.788
47DAP/43DAP0.997730.998
52DAP/47DAP0.974110.9
57DAP/52DAP0.990290.828
57DAP/7DAP1.034611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.225830.209
17DAP/reference1.269350.134
27DAP/reference1.41030.049
39DAP/reference1.479410.252
41DAP/reference1.489440.042
42DAP/reference1.508620.016
43DAP/reference1.275270.083
47DAP/reference0.948210.383
52DAP/reference1.160520.092
57DAP/reference1.276790.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.160140.315
17DAP/reference1.284610.068
27DAP/reference1.081750.67
39DAP/reference1.093090.316
41DAP/reference0.931870.268
42DAP/reference0.976540.482
43DAP/reference1.061460.939
47DAP/reference0.943190.232
52DAP/reference1.205650.013
57DAP/reference1.304640.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.275720.046
17DAP/reference1.093630.511
27DAP/reference1.017990.934
39DAP/reference1.121620.163
41DAP/reference1.035080.984
42DAP/reference1.127990.214
43DAP/reference1.073110.721
47DAP/reference1.11160.163
52DAP/reference1.224940.33
57DAP/reference1.041230.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.034071
26DAP/20DAP0.887940.512
34DAP/26DAP1.033721
51DAP/34DAP0.972170.807
52DAP/51DAP1.073220.481
53DAP/52DAP1.012350.921
55DAP/53DAP1.121630.399
57DAP/55DAP1.059550.927
62DAP/57DAP1.127120.515
68DAP/62DAP0.700120.177
68DAP/14DAP0.721270.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.986650.52

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.815010.323
Mature Green Tomato/Ripe Tomato2.629340.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.235251
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.16392N/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.72374N/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.002561
IL12-4/WTpooled1.071030.891
IL1-4/WTpooled1.028771
WT/WTpooled1.060251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.458870.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01148N/A
DC3000/delta hrp 6h1.026081
DC3000/delta hrp 12h1.053821
DC3000/delta hrp 24h0.994331

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.890350.568
DC3000 delta B/DC3000 delta AB1.003451

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.335921
Exp 36h0.743870.471
Exp 60h0.912670.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98721
Var 0h1.037421
Var 12h I row2-row11.203620.187
Var 12h NI row2-row10.842990.488
Var 36h I row2-row11.076331
Var 36h NI row2-row10.766490.45
Var 60h I row2-row11.921330.562
Var 60h NI row2-row11.081930.904
Time course 0hI-0hNI1.103340.764
Time course 12hI-12hNI1.02090.867
Time course 36hI-36hNI1.090070.19
Time course 60hI-60hNI1.576040.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.927030.314
transgenic ySAMdc/azygous control (breaker)1.21510.248
transgenic ySAMdc/azygous control (red)1.086160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009410.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.374070.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.220090.087
Manapal/WT (break)1.884990.126
Manapal/WT (red)1.559881