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Expression of 1-1-3.3.1.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.229360.534
27DAP/17DAP1.300510.749
39DAP/27DAP1.008620.857
41DAP/39DAP0.931640.675
42DAP/41DAP0.754420.774
43DAP/42DAP0.940470.888
47DAP/43DAP1.122730.569
52DAP/47DAP1.129970.927
57DAP/52DAP1.221050.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018940.9
17DAP/reference1.102810.026
27DAP/reference1.033450.771
39DAP/reference1.111110.129
41DAP/reference1.021821
42DAP/reference0.895910.054
43DAP/reference1.026430.678
47DAP/reference1.034120.963
52DAP/reference0.936780.215
57DAP/reference0.841990.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.293110.063
27DAP/17DAP1.21970.151
39DAP/27DAP0.999371
41DAP/39DAP1.038830.876
42DAP/41DAP1.155620.316
43DAP/42DAP1.078330.094
47DAP/43DAP0.860530.044
52DAP/47DAP1.011661
57DAP/52DAP1.031850.906
57DAP/7DAP1.001751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980420.495
17DAP/reference0.937870.167
27DAP/reference1.071410.551
39DAP/reference1.121070.198
41DAP/reference1.202040.113
42DAP/reference0.908630.09
43DAP/reference0.922650.21
47DAP/reference1.190830.219
52DAP/reference0.921870.232
57DAP/reference0.917090.105

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.143280.167
17DAP/reference1.123450.229
27DAP/reference1.189510.07
39DAP/reference1.138460.233
41DAP/reference1.045520.672
42DAP/reference0.939450.355
43DAP/reference1.180170.055
47DAP/reference1.008951
52DAP/reference1.122470.057
57DAP/reference1.100310.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901360.135
17DAP/reference0.975080.658
27DAP/reference0.93180.23
39DAP/reference1.216570.39
41DAP/reference0.935230.331
42DAP/reference1.006391
43DAP/reference0.785510.064
47DAP/reference0.986860.574
52DAP/reference0.972830.663
57DAP/reference0.999880.801

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.171340.966
26DAP/20DAP1.611480.243
34DAP/26DAP0.802930.479
51DAP/34DAP1.504960.087
52DAP/51DAP0.915591
53DAP/52DAP1.34720.413
55DAP/53DAP0.82370.225
57DAP/55DAP1.172680.881
62DAP/57DAP1.150160.393
68DAP/62DAP1.206560.864
68DAP/14DAP2.218280.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.005790.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.936390.577
Mature Green Tomato/Ripe Tomato1.285340.237
Immature Eggplant/Mature Eggplant0.837060.064
Ripe Pepper/Ripe Tomato1.349971
Mature Eggplant/Ripe Tomato1.854260.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.918630.944
1-1-2/M821.05021
12-2/M820.887410.955
12-4/M821.153040.611
1-3/M820.97631
2-1-1/M821.050361
2-1/M821.04036N/A
2-6/M820.83861
3-2/M821.113830.426
4-1-1/M820.957781
4-1/M821.04043N/A
4-3-2/M821.087191
4-3/M821.03551
5-3/M820.963331
6-2/M820.996141
6-3/M821.02671
7-1/M821.05768N/A
7-2/M820.920671
9-3-2/M821.103651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.011091
IL2-6/WTpooled1.57232N/A
IL7-5/WTpooled0.996761
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.36662N/A
IL1-4/WTpooled1.010881
WT/WTpooled1.270951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.210680.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.990861
DC3000/delta hrp 6h0.948350.95
DC3000/delta hrp 12h0.931931
DC3000/delta hrp 24h1.031970.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.066460.313
DC3000 delta B/DC3000 delta AB1.220190.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.988781
Exp 36h1.26960.409
Exp 60h1.044651

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.954591
Var 0h0.930730.933
Var 12h I row2-row11.31820.406
Var 12h NI row2-row11.407820.649
Var 36h I row2-row10.877621
Var 36h NI row2-row11.03851
Var 60h I row2-row10.8820.287
Var 60h NI row2-row10.981011
Time course 0hI-0hNI0.932080.609
Time course 12hI-12hNI1.135590.125
Time course 36hI-36hNI1.179740.028
Time course 60hI-60hNI1.462380.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967550.529
transgenic ySAMdc/azygous control (breaker)0.883450.49
transgenic ySAMdc/azygous control (red)0.936121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.970970.231

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.269880.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.479280.172
Manapal/WT (break)0.545710.299
Manapal/WT (red)0.641920.181