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Expression of 1-1-3.3.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.048710.823
27DAP/17DAP1.234620.866
39DAP/27DAP0.853150.462
41DAP/39DAP1.169660.806
42DAP/41DAP1.834490.029
43DAP/42DAP1.101880.968
47DAP/43DAP1.158930.909
52DAP/47DAP0.741950.43
57DAP/52DAP1.181020.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.074220.366
17DAP/reference1.081240.229
27DAP/reference0.973570.623
39DAP/reference0.983160.762
41DAP/reference1.055880.48
42DAP/reference1.008070.469
43DAP/reference1.037510.596
47DAP/reference1.026191
52DAP/reference0.926980.223
57DAP/reference0.855150.047

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.324050.34
27DAP/17DAP1.042871
39DAP/27DAP1.125790.646
41DAP/39DAP0.788720.137
42DAP/41DAP1.126110.622
43DAP/42DAP1.776340.015
47DAP/43DAP1.009051
52DAP/47DAP1.080.831
57DAP/52DAP0.84620.289
57DAP/7DAP1.637950.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868030.108
17DAP/reference1.077210.437
27DAP/reference0.998550.748
39DAP/reference1.009041
41DAP/reference0.9870.646
42DAP/reference0.843720.189
43DAP/reference1.034711
47DAP/reference1.08310.404
52DAP/reference0.921220.196
57DAP/reference0.76760.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.05320.642
17DAP/reference1.159090.11
27DAP/reference1.192650.083
39DAP/reference1.009461
41DAP/reference1.097710.599
42DAP/reference0.941980.261
43DAP/reference1.256270.058
47DAP/reference1.031120.513
52DAP/reference1.038060.938
57DAP/reference1.081490.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971920.526
17DAP/reference0.93190.407
27DAP/reference0.999470.763
39DAP/reference1.084070.211
41DAP/reference0.928990.119
42DAP/reference0.925580.361
43DAP/reference0.863570.102
47DAP/reference0.983880.574
52DAP/reference0.937030.518
57DAP/reference0.820940.046

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989171
26DAP/20DAP0.906071
34DAP/26DAP0.961940.936
51DAP/34DAP1.068090.795
52DAP/51DAP1.158560.207
53DAP/52DAP1.981420.028
55DAP/53DAP1.654560.335
57DAP/55DAP1.214330.626
62DAP/57DAP0.982781
68DAP/62DAP1.295020.729
68DAP/14DAP1.435340.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.765220.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.93296N/A
Mature Green Tomato/Ripe Tomato0.61863N/A
Immature Eggplant/Mature Eggplant3.174620.05
Ripe Pepper/Ripe Tomato1.02271
Mature Eggplant/Ripe Tomato1.400270.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.851820.944
1-1-2/M82N/AN/A
12-2/M821.038981
12-4/M820.954991
1-3/M821.15209N/A
2-1-1/M821.102890.439
2-1/M820.54421N/A
2-6/M820.955781
3-2/M82N/AN/A
4-1-1/M820.84341N/A
4-1/M82N/AN/A
4-3-2/M821.10917N/A
4-3/M820.956411
5-3/M821.144640.572
6-2/M821.084961
6-3/M821.011151
7-1/M82N/AN/A
7-2/M820.91080.599
9-3-2/M820.89377N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.965751
IL2-6/WTpooled1.248840.584
IL7-5/WTpooled0.913441
IL7-3/WTpooled1.117081
IL12-4/WTpooled1.143430.785
IL1-4/WTpooled0.965110.834
WT/WTpooled1.015671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.851950.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946321
DC3000/delta hrp 6h1.135561
DC3000/delta hrp 12h1.040251
DC3000/delta hrp 24h1.04870.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.66263N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.816081
Exp 36h1.11130.693
Exp 60h1.003091

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.953111
Var 0h0.784660.244
Var 12h I row2-row10.934620.418
Var 12h NI row2-row10.98871
Var 36h I row2-row11.901641
Var 36h NI row2-row11.464550.482
Var 60h I row2-row10.941430.287
Var 60h NI row2-row11.441860.904
Time course 0hI-0hNI1.005721
Time course 12hI-12hNI0.871040.173
Time course 36hI-36hNI0.768970.023
Time course 60hI-60hNI0.312070.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.00641
transgenic ySAMdc/azygous control (breaker)0.881620.251
transgenic ySAMdc/azygous control (red)0.970851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97950.371

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.077580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.004061
Manapal/WT (break)1.120280.381
Manapal/WT (red)1.209490.413