Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-3.3.10.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.02573	0.904
27DAP/17DAP	0.95775	0.952
39DAP/27DAP	0.93477	0.537
41DAP/39DAP	1.06208	0.788
42DAP/41DAP	0.96524	1
43DAP/42DAP	1.03189	1
47DAP/43DAP	1.14332	0.746
52DAP/47DAP	1.09468	0.915
57DAP/52DAP	1.02003	0.969

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01415	0.9
17DAP/reference	1.02028	0.342
27DAP/reference	0.95373	0.385
39DAP/reference	1.10855	0.352
41DAP/reference	0.97476	0.667
42DAP/reference	0.99131	0.337
43DAP/reference	1.02421	0.569
47DAP/reference	0.98238	0.137
52DAP/reference	1.0337	0.633
57DAP/reference	0.95232	0.262

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9676	0.697
27DAP/17DAP	0.98302	0.887
39DAP/27DAP	0.9816	0.925
41DAP/39DAP	1.00638	0.909
42DAP/41DAP	0.99181	0.882
43DAP/42DAP	1.0561	0.021
47DAP/43DAP	1.00489	0.969
52DAP/47DAP	0.98321	0.93
57DAP/52DAP	0.99708	0.887
57DAP/7DAP	0.98998	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91972	0.168
17DAP/reference	1.01122	0.896
27DAP/reference	0.91318	0.012
39DAP/reference	0.85261	0.011
41DAP/reference	0.7767	0.015
42DAP/reference	0.80833	0.011
43DAP/reference	0.79506	0.013
47DAP/reference	0.86247	0.168
52DAP/reference	0.75824	0.017
57DAP/reference	0.75491	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9932	0.884
17DAP/reference	0.96123	0.326
27DAP/reference	0.89508	0.144
39DAP/reference	0.99058	0.539
41DAP/reference	0.91501	0.137
42DAP/reference	0.98467	0.534
43DAP/reference	1.02336	0.899
47DAP/reference	0.99419	0.625
52DAP/reference	0.94819	0.055
57DAP/reference	0.92781	0.054

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94733	0.082
17DAP/reference	0.93619	0.135
27DAP/reference	0.959	0.337
39DAP/reference	0.86818	0.019
41DAP/reference	0.95619	0.371
42DAP/reference	0.88753	0.049
43DAP/reference	0.88058	0.125
47DAP/reference	0.93661	0.093
52DAP/reference	0.80463	0.164
57DAP/reference	0.90298	0.111

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.06249	0.916
26DAP/20DAP	1.02122	1
34DAP/26DAP	1.00493	1
51DAP/34DAP	1.06588	0.377
52DAP/51DAP	1.00428	0.954
53DAP/52DAP	1.07179	0.458
55DAP/53DAP	0.81147	N/A
57DAP/55DAP	0.95982	0.845
62DAP/57DAP	0.98031	0.994
68DAP/62DAP	1.34371	0.265
68DAP/14DAP	1.31044	0.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.01135	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.03617	1
Mature Green Tomato/Ripe Tomato	1.07416	0.814
Immature Eggplant/Mature Eggplant	1.70269	0.055
Ripe Pepper/Ripe Tomato	1.12862	1
Mature Eggplant/Ripe Tomato	2.08311	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.94801	0.944
1-1-2/M82	0.99588	1
12-2/M82	0.94508	0.955
12-4/M82	0.99343	1
1-3/M82	1.02263	1
2-1-1/M82	0.89494	0.465
2-1/M82	N/A	N/A
2-6/M82	0.94394	1
3-2/M82	0.90833	0.752
4-1-1/M82	1.02688	1
4-1/M82	1.00142	1
4-3-2/M82	1.07824	1
4-3/M82	0.93923	1
5-3/M82	1.00072	1
6-2/M82	0.99526	1
6-3/M82	1.02366	1
7-1/M82	1.0546	0.925
7-2/M82	0.93726	0.796
9-3-2/M82	0.86003	0.355

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.04709	0.788
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.05794	1
IL12-4/WTpooled	1.10372	0.503
IL1-4/WTpooled	1.03005	N/A
WT/WTpooled	0.92604	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.08394	0.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.10347	0.875
DC3000/delta hrp 6h	1.06918	0.95
DC3000/delta hrp 12h	0.96943	1
DC3000/delta hrp 24h	1.04069	0.553

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.01021	0.598
DC3000 delta B/DC3000 delta AB	1.04171	0.528

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.08914	1
Exp 36h	1.26404	0.409
Exp 60h	1.48464	0.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.0056	1
Var 0h	0.78621	0.933
Var 12h I row2-row1	1.0858	0.202
Var 12h NI row2-row1	0.98101	0.906
Var 36h I row2-row1	0.89178	1
Var 36h NI row2-row1	1.01049	1
Var 60h I row2-row1	1.18695	0.562
Var 60h NI row2-row1	1.12964	0.904
Time course 0hI-0hNI	1.03682	0.867
Time course 12hI-12hNI	1.01359	0.854
Time course 36hI-36hNI	0.98586	0.58
Time course 60hI-60hNI	0.97126	0.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.93309	0.614
transgenic ySAMdc/azygous control (breaker)	1.32017	1
transgenic ySAMdc/azygous control (red)	1.28847	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.99274	0.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.06524	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.97833	1
Manapal/WT (break)	0.84818	1
Manapal/WT (red)	0.85995	0.36