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Expression of 1-1-3.3.12.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.019340.904
27DAP/17DAP0.975210.959
39DAP/27DAP0.936220.641
41DAP/39DAP1.067040.814
42DAP/41DAP1.266360.777
43DAP/42DAP0.946910.622
47DAP/43DAP0.963120.84
52DAP/47DAP0.942180.793
57DAP/52DAP0.971210.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.023970.544
17DAP/reference1.002760.764
27DAP/reference1.044730.58
39DAP/reference0.952970.475
41DAP/reference0.932680.341
42DAP/reference0.967330.278
43DAP/reference1.011510.899
47DAP/reference1.013790.794
52DAP/reference1.082050.498
57DAP/reference1.016760.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01341
27DAP/17DAP0.970750.748
39DAP/27DAP1.018370.707
41DAP/39DAP1.014170.868
42DAP/41DAP0.969160.687
43DAP/42DAP1.044110.478
47DAP/43DAP1.031490.744
52DAP/47DAP0.983280.857
57DAP/52DAP0.985130.742
57DAP/7DAP0.983591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92090.157
17DAP/reference0.949520.144
27DAP/reference1.020570.664
39DAP/reference0.887280.023
41DAP/reference0.83580.027
42DAP/reference0.784080.01
43DAP/reference0.744030.022
47DAP/reference0.852570.222
52DAP/reference0.719170.017
57DAP/reference0.783960.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.935450.268
17DAP/reference0.991030.728
27DAP/reference0.907890.393
39DAP/reference0.963440.221
41DAP/reference0.970850.393
42DAP/reference0.911060.024
43DAP/reference0.997220.831
47DAP/reference0.930140.066
52DAP/reference0.991670.576
57DAP/reference1.06540.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980770.526
17DAP/reference0.974170.426
27DAP/reference0.872340.038
39DAP/reference0.923320.024
41DAP/reference0.979710.618
42DAP/reference0.978310.087
43DAP/reference0.931920.092
47DAP/reference1.020970.73
52DAP/reference0.982480.675
57DAP/reference0.967790.333

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.039210.945
26DAP/20DAP0.99741
34DAP/26DAP1.037270.819
51DAP/34DAP0.974160.807
52DAP/51DAP1.021710.758
53DAP/52DAP1.115880.565
55DAP/53DAP1.040440.989
57DAP/55DAP1.037460.975
62DAP/57DAP0.942410.681
68DAP/62DAP0.936420.609
68DAP/14DAP0.790690.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.901270.083

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.941170.522
Immature Eggplant/Mature Eggplant1.6319N/A
Ripe Pepper/Ripe Tomato0.8151
Mature Eggplant/Ripe Tomato0.760070.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.951030.944
1-1-2/M820.96861
12-2/M820.985910.955
12-4/M820.944230.619
1-3/M820.994831
2-1-1/M821.020581
2-1/M821.201011
2-6/M820.965161
3-2/M821.005171
4-1-1/M820.968611
4-1/M820.923491
4-3-2/M820.959711
4-3/M821.085291
5-3/M821.091980.496
6-2/M821.030521
6-3/M821.048271
7-1/M820.976191
7-2/M820.977260.881
9-3-2/M820.858530.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.929561
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.281690.362
IL12-4/WTpooled1.1945N/A
IL1-4/WTpooled1.018731
WT/WTpooled0.986411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.083950.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037730.921
DC3000/delta hrp 6h1.191211
DC3000/delta hrp 12h0.964221
DC3000/delta hrp 24h1.06220.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.073110.408
DC3000 delta B/DC3000 delta AB1.048620.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.175290.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010521
Var 0h1.451230.936
Var 12h I row2-row11.035190.544
Var 12h NI row2-row10.920850.627
Var 36h I row2-row10.895570.805
Var 36h NI row2-row10.913910.469
Var 60h I row2-row11.005091
Var 60h NI row2-row11.125620.904
Time course 0hI-0hNI1.072080.764
Time course 12hI-12hNI1.003590.892
Time course 36hI-36hNI1.138030.063
Time course 60hI-60hNI1.135120.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.007321
transgenic ySAMdc/azygous control (breaker)1.063841
transgenic ySAMdc/azygous control (red)1.191090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.99630.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.105651

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.903661
Manapal/WT (break)0.947861
Manapal/WT (red)0.97410.607