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Expression of 1-1-3.3.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.224220.477
27DAP/17DAP0.978120.928
39DAP/27DAP1.233570.622
41DAP/39DAP0.936570.697
42DAP/41DAP1.060280.929
43DAP/42DAP1.109161
47DAP/43DAP0.901090.663
52DAP/47DAP0.853430.615
57DAP/52DAP0.856630.867

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.308380.034
17DAP/reference1.159460.096
27DAP/reference1.239520.098
39DAP/reference1.054230.603
41DAP/reference1.186440.038
42DAP/reference1.110180.13
43DAP/reference0.962390.653
47DAP/reference1.15610.13
52DAP/reference1.360480.017
57DAP/reference1.175970.3

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.006930.871
27DAP/17DAP1.159550.381
39DAP/27DAP0.845030.042
41DAP/39DAP1.153680.763
42DAP/41DAP0.872070.25
43DAP/42DAP0.803090.027
47DAP/43DAP1.179310.618
52DAP/47DAP0.976670.902
57DAP/52DAP0.891760.436
57DAP/7DAP0.804371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.746220.025
17DAP/reference1.213830.064
27DAP/reference1.160.371
39DAP/reference1.288560.007
41DAP/reference1.179770.072
42DAP/reference1.214020.233
43DAP/reference1.159450.118
47DAP/reference1.266950.046
52DAP/reference1.222750.017
57DAP/reference1.248550.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899050.426
17DAP/reference0.984110.594
27DAP/reference1.196950.217
39DAP/reference1.085320.67
41DAP/reference1.338590.034
42DAP/reference1.409980.025
43DAP/reference0.870260.186
47DAP/reference1.160120.225
52DAP/reference1.187920.032
57DAP/reference1.160030.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.251850.043
17DAP/reference1.197270.241
27DAP/reference1.128270.12
39DAP/reference1.160650.064
41DAP/reference1.181770.054
42DAP/reference1.171660.294
43DAP/reference1.200660.308
47DAP/reference1.250710.011
52DAP/reference1.248260.443
57DAP/reference1.078850.452

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.241030.008
26DAP/20DAP1.334650.262
34DAP/26DAP0.824460.404
51DAP/34DAP0.979570.824
52DAP/51DAP0.703880.151
53DAP/52DAP1.144270.23
55DAP/53DAP0.667140.067
57DAP/55DAP0.904890.532
62DAP/57DAP0.99630.871
68DAP/62DAP0.84670.668
68DAP/14DAP1.244740.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.015141

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.945020.018
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.90148N/A
Mature Eggplant/Ripe Tomato1.216960.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.802870.883
1-1-2/M821.105041
12-2/M820.948630.656
12-4/M820.772230.619
1-3/M821.55690.255
2-1-1/M820.830640.465
2-1/M820.90086N/A
2-6/M820.990311
3-2/M821.036711
4-1-1/M820.90913N/A
4-1/M820.89276N/A
4-3-2/M821.364050.508
4-3/M821.024671
5-3/M821.082171
6-2/M821.055931
6-3/M82N/AN/A
7-1/M820.92172N/A
7-2/M821.307580.385
9-3-2/M821.470881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.09303N/A
IL2-6/WTpooled0.909181
IL7-5/WTpooled0.5116N/A
IL7-3/WTpooled2.002211
IL12-4/WTpooled0.996371
IL1-4/WTpooled1.43281
WT/WTpooled0.928491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.996571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089230.823
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.938481
DC3000/delta hrp 24h0.980330.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.245580.25
DC3000 delta B/DC3000 delta AB1.112550.429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.068941
Var 0h1.008691
Var 12h I row2-row10.890280.467
Var 12h NI row2-row11.068091
Var 36h I row2-row10.887911
Var 36h NI row2-row11.090921
Var 60h I row2-row10.843150.582
Var 60h NI row2-row10.846230.38
Time course 0hI-0hNI1.07950.719
Time course 12hI-12hNI0.990910.984
Time course 36hI-36hNI1.004090.811
Time course 60hI-60hNI1.128370.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.075710.863
transgenic ySAMdc/azygous control (breaker)0.846340.49
transgenic ySAMdc/azygous control (red)0.821811

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.00751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.945951
Manapal/WT (break)0.820240.333
Manapal/WT (red)0.839430.188