Expression of 1-1-3.3.8.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.72083 | 0.124 |
27DAP/17DAP | 1.19778 | 0.804 |
39DAP/27DAP | 1.33902 | 0.447 |
41DAP/39DAP | 0.74264 | 0.128 |
42DAP/41DAP | 1.06426 | 1 |
43DAP/42DAP | 1.15821 | 0.778 |
47DAP/43DAP | 1.01943 | 0.979 |
52DAP/47DAP | 0.95346 | 0.761 |
57DAP/52DAP | 1.32169 | 0.656 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92916 | 0.412 |
17DAP/reference | 1.19623 | 0.33 |
27DAP/reference | 1.71589 | 0.009 |
39DAP/reference | 1.43296 | 0.122 |
41DAP/reference | 1.38161 | 0.058 |
42DAP/reference | 1.43213 | 0.001 |
43DAP/reference | 1.52689 | 0.012 |
47DAP/reference | 2.48399 | 0.001 |
52DAP/reference | 2.85047 | 0.008 |
57DAP/reference | 2.55433 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.45402 | 0.06 |
27DAP/17DAP | 1.07528 | 0.831 |
39DAP/27DAP | 1.11555 | 0.383 |
41DAP/39DAP | 1.3526 | 0.827 |
42DAP/41DAP | 1.02943 | 1 |
43DAP/42DAP | 0.8181 | 0.048 |
47DAP/43DAP | 1.08719 | 0.765 |
52DAP/47DAP | 1.21157 | 0.504 |
57DAP/52DAP | 1.13523 | 0.389 |
57DAP/7DAP | 1.38193 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3097 | 0.124 |
17DAP/reference | 1.3228 | 0.006 |
27DAP/reference | 1.35757 | 0.006 |
39DAP/reference | 1.91373 | 0.005 |
41DAP/reference | 1.36099 | 0.018 |
42DAP/reference | 1.4937 | 0.007 |
43DAP/reference | 1.59347 | 0.006 |
47DAP/reference | 2.1393 | 0.014 |
52DAP/reference | 1.60915 | 0.012 |
57DAP/reference | 2.11686 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.55512 | 0.007 |
17DAP/reference | 1.0212 | 0.83 |
27DAP/reference | 1.31222 | 0.208 |
39DAP/reference | 1.34919 | 0.034 |
41DAP/reference | 1.232 | 0.013 |
42DAP/reference | 1.37087 | 0.009 |
43DAP/reference | 1.05166 | 0.67 |
47DAP/reference | 1.37771 | 0.008 |
52DAP/reference | 1.12711 | 0.085 |
57DAP/reference | 0.89772 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87309 | 0.104 |
17DAP/reference | 0.76528 | 0.099 |
27DAP/reference | 1.28749 | 0.021 |
39DAP/reference | 1.38038 | 0.018 |
41DAP/reference | 1.18866 | 0.06 |
42DAP/reference | 1.61794 | 0.009 |
43DAP/reference | 1.86907 | 0.008 |
47DAP/reference | 1.76301 | 0.042 |
52DAP/reference | 2.10367 | 0.028 |
57DAP/reference | 5.99092 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.37642 | 0.966 |
26DAP/20DAP | 1.95337 | 0.097 |
34DAP/26DAP | 0.912 | 0.606 |
51DAP/34DAP | 0.79334 | 0.063 |
52DAP/51DAP | 0.75023 | 0.079 |
53DAP/52DAP | 1.12552 | 0.47 |
55DAP/53DAP | 0.81835 | 0.14 |
57DAP/55DAP | 1.173 | 0.474 |
62DAP/57DAP | 1.23045 | 0.767 |
68DAP/62DAP | 1.09259 | 0.878 |
68DAP/14DAP | 1.75236 | 0.039 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.45501 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.11955 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.12873 | 0.044 |
Immature Eggplant/Mature Eggplant | 1.38986 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.47551 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.61214 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88349 | 0.944 |
1-1-2/M82 | 1.17631 | 1 |
12-2/M82 | 0.86394 | 0.955 |
12-4/M82 | 1.09668 | 1 |
1-3/M82 | 2.01016 | 0.248 |
2-1-1/M82 | 1.02165 | 1 |
2-1/M82 | 0.93173 | 0.74 |
2-6/M82 | 1.00591 | 1 |
3-2/M82 | 1.12389 | 0.967 |
4-1-1/M82 | 0.81728 | 1 |
4-1/M82 | 1.31595 | 0.853 |
4-3-2/M82 | 0.96456 | 1 |
4-3/M82 | 0.88761 | 1 |
5-3/M82 | 1.05192 | 1 |
6-2/M82 | 1.01886 | 1 |
6-3/M82 | 1.00731 | 1 |
7-1/M82 | 1.10875 | 0.539 |
7-2/M82 | 1.28613 | 1 |
9-3-2/M82 | 1.07712 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93607 | 0.247 |
IL2-6/WTpooled | 0.94096 | 0.473 |
IL7-5/WTpooled | 1.5952 | 0.792 |
IL7-3/WTpooled | 0.98494 | 1 |
IL12-4/WTpooled | 0.93106 | 1 |
IL1-4/WTpooled | 0.97922 | 0.834 |
WT/WTpooled | 0.96008 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18332 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13144 | 0.692 |
DC3000/delta hrp 6h | 1.04852 | 1 |
DC3000/delta hrp 12h | 0.8304 | 1 |
DC3000/delta hrp 24h | 1.0537 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.27865 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.253 | 0.122 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27576 | 1 |
Exp 36h | 1.19137 | 1 |
Exp 60h | 1.36939 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98835 | 1 |
Var 0h | 0.3761 | 0.457 |
Var 12h I row2-row1 | 0.89749 | 0.357 |
Var 12h NI row2-row1 | 1.06835 | 1 |
Var 36h I row2-row1 | 1.00308 | 1 |
Var 36h NI row2-row1 | 0.95615 | 0.706 |
Var 60h I row2-row1 | 0.84919 | 0.306 |
Var 60h NI row2-row1 | 0.88957 | 0.818 |
Time course 0hI-0hNI | 1.09177 | 0.377 |
Time course 12hI-12hNI | 1.01782 | 0.803 |
Time course 36hI-36hNI | 1.27725 | 0.006 |
Time course 60hI-60hNI | 1.62387 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1308 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.20986 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.92664 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.5162 | 0.063 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83734 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.54453 | 0.172 |
Manapal/WT (break) | 0.94771 | 1 |
Manapal/WT (red) | 0.72236 | 0.181 |
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