Expression of 1-1-3.3.8.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.720830.124
27DAP/17DAP1.197780.804
39DAP/27DAP1.339020.447
41DAP/39DAP0.742640.128
42DAP/41DAP1.064261
43DAP/42DAP1.158210.778
47DAP/43DAP1.019430.979
52DAP/47DAP0.953460.761
57DAP/52DAP1.321690.656

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.929160.412
17DAP/reference1.196230.33
27DAP/reference1.715890.009
39DAP/reference1.432960.122
41DAP/reference1.381610.058
42DAP/reference1.432130.001
43DAP/reference1.526890.012
47DAP/reference2.483990.001
52DAP/reference2.850470.008
57DAP/reference2.554330.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.454020.06
27DAP/17DAP1.075280.831
39DAP/27DAP1.115550.383
41DAP/39DAP1.35260.827
42DAP/41DAP1.029431
43DAP/42DAP0.81810.048
47DAP/43DAP1.087190.765
52DAP/47DAP1.211570.504
57DAP/52DAP1.135230.389
57DAP/7DAP1.381931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.30970.124
17DAP/reference1.32280.006
27DAP/reference1.357570.006
39DAP/reference1.913730.005
41DAP/reference1.360990.018
42DAP/reference1.49370.007
43DAP/reference1.593470.006
47DAP/reference2.13930.014
52DAP/reference1.609150.012
57DAP/reference2.116860.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.555120.007
17DAP/reference1.02120.83
27DAP/reference1.312220.208
39DAP/reference1.349190.034
41DAP/reference1.2320.013
42DAP/reference1.370870.009
43DAP/reference1.051660.67
47DAP/reference1.377710.008
52DAP/reference1.127110.085
57DAP/reference0.897720.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873090.104
17DAP/reference0.765280.099
27DAP/reference1.287490.021
39DAP/reference1.380380.018
41DAP/reference1.188660.06
42DAP/reference1.617940.009
43DAP/reference1.869070.008
47DAP/reference1.763010.042
52DAP/reference2.103670.028
57DAP/reference5.990920.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.376420.966
26DAP/20DAP1.953370.097
34DAP/26DAP0.9120.606
51DAP/34DAP0.793340.063
52DAP/51DAP0.750230.079
53DAP/52DAP1.125520.47
55DAP/53DAP0.818350.14
57DAP/55DAP1.1730.474
62DAP/57DAP1.230450.767
68DAP/62DAP1.092590.878
68DAP/14DAP1.752360.039

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.455010.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.119550.058
Mature Green Tomato/Ripe Tomato1.128730.044
Immature Eggplant/Mature Eggplant1.389860.05
Ripe Pepper/Ripe Tomato0.475510.224
Mature Eggplant/Ripe Tomato0.612141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.883490.944
1-1-2/M821.176311
12-2/M820.863940.955
12-4/M821.096681
1-3/M822.010160.248
2-1-1/M821.021651
2-1/M820.931730.74
2-6/M821.005911
3-2/M821.123890.967
4-1-1/M820.817281
4-1/M821.315950.853
4-3-2/M820.964561
4-3/M820.887611
5-3/M821.051921
6-2/M821.018861
6-3/M821.007311
7-1/M821.108750.539
7-2/M821.286131
9-3-2/M821.077121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.936070.247
IL2-6/WTpooled0.940960.473
IL7-5/WTpooled1.59520.792
IL7-3/WTpooled0.984941
IL12-4/WTpooled0.931061
IL1-4/WTpooled0.979220.834
WT/WTpooled0.960081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.183321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.131440.692
DC3000/delta hrp 6h1.048521
DC3000/delta hrp 12h0.83041
DC3000/delta hrp 24h1.05370.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.278650.042
DC3000 delta B/DC3000 delta AB1.2530.122

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.275761
Exp 36h1.191371
Exp 60h1.369390.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988351
Var 0h0.37610.457
Var 12h I row2-row10.897490.357
Var 12h NI row2-row11.068351
Var 36h I row2-row11.003081
Var 36h NI row2-row10.956150.706
Var 60h I row2-row10.849190.306
Var 60h NI row2-row10.889570.818
Time course 0hI-0hNI1.091770.377
Time course 12hI-12hNI1.017820.803
Time course 36hI-36hNI1.277250.006
Time course 60hI-60hNI1.623870.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.13080.339
transgenic ySAMdc/azygous control (breaker)1.209860.248
transgenic ySAMdc/azygous control (red)0.926641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.51620.063

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.837340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.544530.172
Manapal/WT (break)0.947711
Manapal/WT (red)0.722360.181