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Expression of 1-1-3.3.9.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.197740.697
27DAP/17DAP1.187590.902
39DAP/27DAP1.225490.83
41DAP/39DAP0.661490.087
42DAP/41DAP0.999421
43DAP/42DAP0.935250.877
47DAP/43DAP0.660280.16
52DAP/47DAP1.256870.818
57DAP/52DAP1.404030.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018340.844
17DAP/reference1.490830.026
27DAP/reference1.389650.103
39DAP/reference1.220850.149
41DAP/reference1.201960.079
42DAP/reference1.046850.756
43DAP/reference1.032920.866
47DAP/reference0.967930.392
52DAP/reference1.029041
57DAP/reference0.898320.045

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.603440.054
27DAP/17DAP1.203050.523
39DAP/27DAP0.715840.118
41DAP/39DAP1.193050.79
42DAP/41DAP0.870930.173
43DAP/42DAP0.721150.025
47DAP/43DAP0.960660.855
52DAP/47DAP1.08660.823
57DAP/52DAP1.128680.567
57DAP/7DAP0.642281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.8620.032
17DAP/reference1.735210.007
27DAP/reference1.482640.015
39DAP/reference1.230630.333
41DAP/reference1.415670.021
42DAP/reference1.221810.534
43DAP/reference1.57440.026
47DAP/reference1.135240.582
52DAP/reference1.382460.041
57DAP/reference1.562460.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.109040.484
17DAP/reference1.470010.014
27DAP/reference1.105640.704
39DAP/reference1.080770.806
41DAP/reference1.143240.502
42DAP/reference1.272230.029
43DAP/reference0.812080.058
47DAP/reference0.818660.055
52DAP/reference1.140070.114
57DAP/reference1.053390.672

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.567450.02
17DAP/reference1.341440.111
27DAP/reference1.734950.016
39DAP/reference1.382850.018
41DAP/reference1.180490.181
42DAP/reference1.163820.627
43DAP/reference1.377480.465
47DAP/reference0.710230.004
52DAP/reference1.534580.194
57DAP/reference1.074040.933

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.022641
26DAP/20DAP1.878740.097
34DAP/26DAP0.942440.92
51DAP/34DAP0.525730.056
52DAP/51DAP1.176010.51
53DAP/52DAP1.133510.643
55DAP/53DAP1.008990.894
57DAP/55DAP0.894450.664
62DAP/57DAP1.512250.393
68DAP/62DAP0.931120.722
68DAP/14DAP1.060011

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.912760.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.768660.113
Mature Green Tomato/Ripe Tomato2.001630.015
Immature Eggplant/Mature Eggplant0.81010.084
Ripe Pepper/Ripe Tomato0.697421
Mature Eggplant/Ripe Tomato1.226741

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.055381
1-1-2/M820.89431
12-2/M821.06991
12-4/M820.831020.619
1-3/M821.27706N/A
2-1-1/M820.958641
2-1/M821.157741
2-6/M820.858110.501
3-2/M821.45381N/A
4-1-1/M820.946321
4-1/M821.26547N/A
4-3-2/M82N/AN/A
4-3/M821.038471
5-3/M821.00211
6-2/M821.135411
6-3/M821.006651
7-1/M82N/AN/A
7-2/M821.147180.324
9-3-2/M821.04545N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.146330.538
DC3000/delta hrp 6h0.946030.95
DC3000/delta hrp 12h0.84271
DC3000/delta hrp 24h0.912270.306

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.246020.208
DC3000 delta B/DC3000 delta AB1.099810.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.869261
Exp 36h0.971490.943
Exp 60h1.045170.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96881
Var 0h1.175760.782
Var 12h I row2-row11.075020.736
Var 12h NI row2-row11.260760.34
Var 36h I row2-row10.992231
Var 36h NI row2-row10.951580.743
Var 60h I row2-row10.757240.292
Var 60h NI row2-row11.003411
Time course 0hI-0hNI1.03470.867
Time course 12hI-12hNI1.055680.693
Time course 36hI-36hNI0.952190.46
Time course 60hI-60hNI1.377020.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.089880.431
transgenic ySAMdc/azygous control (breaker)0.964040.49
transgenic ySAMdc/azygous control (red)1.083750.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.386310.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.821180.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.810220.172
Manapal/WT (break)0.867081
Manapal/WT (red)0.693960.181