Expression of 1-1-3.4.13.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.502040.725
27DAP/17DAP1.017791
39DAP/27DAP1.337020.59
41DAP/39DAP1.102320.935
42DAP/41DAP1.19760.978
43DAP/42DAP0.978950.909
47DAP/43DAP1.372980.513
52DAP/47DAP0.915010.721
57DAP/52DAP0.830810.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.35930.049
17DAP/reference1.26750.457
27DAP/reference1.07580.111
39DAP/reference1.062330.786
41DAP/reference1.420020.018
42DAP/reference1.206260.007
43DAP/reference0.85807
47DAP/reference1.108570.243
52DAP/reference1.241550.84
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081350.934
27DAP/17DAP0.963540.887
39DAP/27DAP0.93877
41DAP/39DAP0.863030.512
42DAP/41DAP2.783390.872
43DAP/42DAP0.87076
47DAP/43DAP0.88250.857
52DAP/47DAP3.302940.234
57DAP/52DAP0.837220.415
57DAP/7DAP0.408370.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.457850.17
17DAP/reference2.02414
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference1.13966
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference2.65619
57DAP/reference0.616370.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference1.333491
27DAP/reference1.165980.516
39DAP/reference1.393690.065
41DAP/reference1.178760.309
42DAP/reference1.133570.569
43DAP/reference1.32214
47DAP/reference1.077130.441
52DAP/reference1.384170.007
57DAP/reference1.452470.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.56586
17DAP/referenceN/AN/A
27DAP/reference0.13015
39DAP/reference0.67917
41DAP/referenceN/AN/A
42DAP/reference1.088290.994
43DAP/reference0.834470.348
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/reference0.710030.062

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.190390.966
26DAP/20DAP1.30899
34DAP/26DAP1.14965
51DAP/34DAP0.76921
52DAP/51DAP1.09048
53DAP/52DAP0.986310.938
55DAP/53DAP0.926930.761
57DAP/55DAP0.72924
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP0.266440.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.702410.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.938250.243
IL2-6/WTpooled0.98811
IL7-5/WTpooled0.99923
IL7-3/WTpooled0.941430.418
IL12-4/WTpooled1.046730.839
IL1-4/WTpooled0.90969
WT/WTpooled1.069081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.996521
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.91610.459

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.772740.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.078411
Manapal/WT (red)N/AN/A