Expression of 1-1-3.4.13.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.50204 | 0.725 |
27DAP/17DAP | 1.01779 | 1 |
39DAP/27DAP | 1.33702 | 0.59 |
41DAP/39DAP | 1.10232 | 0.935 |
42DAP/41DAP | 1.1976 | 0.978 |
43DAP/42DAP | 0.97895 | 0.909 |
47DAP/43DAP | 1.37298 | 0.513 |
52DAP/47DAP | 0.91501 | 0.721 |
57DAP/52DAP | 0.83081 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3593 | 0.049 |
17DAP/reference | 1.2675 | 0.457 |
27DAP/reference | 1.0758 | 0.111 |
39DAP/reference | 1.06233 | 0.786 |
41DAP/reference | 1.42002 | 0.018 |
42DAP/reference | 1.20626 | 0.007 |
43DAP/reference | 0.85807 | |
47DAP/reference | 1.10857 | 0.243 |
52DAP/reference | 1.24155 | 0.84 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08135 | 0.934 |
27DAP/17DAP | 0.96354 | 0.887 |
39DAP/27DAP | 0.93877 | |
41DAP/39DAP | 0.86303 | 0.512 |
42DAP/41DAP | 2.78339 | 0.872 |
43DAP/42DAP | 0.87076 | |
47DAP/43DAP | 0.8825 | 0.857 |
52DAP/47DAP | 3.30294 | 0.234 |
57DAP/52DAP | 0.83722 | 0.415 |
57DAP/7DAP | 0.40837 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45785 | 0.17 |
17DAP/reference | 2.02414 | |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.13966 | |
43DAP/reference | N/A | N/A |
47DAP/reference | N/A | N/A |
52DAP/reference | 2.65619 | |
57DAP/reference | 0.61637 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 1.33349 | 1 |
27DAP/reference | 1.16598 | 0.516 |
39DAP/reference | 1.39369 | 0.065 |
41DAP/reference | 1.17876 | 0.309 |
42DAP/reference | 1.13357 | 0.569 |
43DAP/reference | 1.32214 | |
47DAP/reference | 1.07713 | 0.441 |
52DAP/reference | 1.38417 | 0.007 |
57DAP/reference | 1.45247 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56586 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.13015 | |
39DAP/reference | 0.67917 | |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.08829 | 0.994 |
43DAP/reference | 0.83447 | 0.348 |
47DAP/reference | N/A | N/A |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.71003 | 0.062 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19039 | 0.966 |
26DAP/20DAP | 1.30899 | |
34DAP/26DAP | 1.14965 | |
51DAP/34DAP | 0.76921 | |
52DAP/51DAP | 1.09048 | |
53DAP/52DAP | 0.98631 | 0.938 |
55DAP/53DAP | 0.92693 | 0.761 |
57DAP/55DAP | 0.72924 | |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 0.26644 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70241 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93825 | 0.243 |
IL2-6/WTpooled | 0.9881 | 1 |
IL7-5/WTpooled | 0.99923 | |
IL7-3/WTpooled | 0.94143 | 0.418 |
IL12-4/WTpooled | 1.04673 | 0.839 |
IL1-4/WTpooled | 0.90969 | |
WT/WTpooled | 1.06908 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.99652 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9161 | 0.459 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77274 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.07841 | 1 |
Manapal/WT (red) | N/A | N/A |
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