Expression of 1-1-3.4.15.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.477010.656
27DAP/17DAP1.572440.697
39DAP/27DAP1.628910.626
41DAP/39DAP0.788830.483
42DAP/41DAP1.028191
43DAP/42DAP1.279661
47DAP/43DAP2.220510.49
52DAP/47DAP1.076430.976
57DAP/52DAP5.170530.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.805960.049
17DAP/reference0.841570.033
27DAP/reference0.955140.484
39DAP/reference0.880620.039
41DAP/reference0.837770.049
42DAP/reference0.793040.001
43DAP/reference0.993370.84
47DAP/reference0.876290.014
52DAP/reference1.021160.84
57DAP/reference1.127320.159

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.05930.947
27DAP/17DAP1.004220.943
39DAP/27DAP1.203640.691
41DAP/39DAP1.09721
42DAP/41DAP0.800490.208
43DAP/42DAP1.150520.478
47DAP/43DAP1.010440.969
52DAP/47DAP0.847560.329
57DAP/52DAP1.387660.199
57DAP/7DAP0.676831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995280.682
17DAP/reference0.898370.072
27DAP/reference0.978710.462
39DAP/reference1.064110.371
41DAP/reference1.002540.778
42DAP/reference1.071860.686
43DAP/reference1.312330.028
47DAP/reference0.943220.383
52DAP/reference1.168010.086
57DAP/reference0.95660.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855030.176
17DAP/reference0.783370.013
27DAP/reference0.825980.056
39DAP/reference0.904570.079
41DAP/reference0.944090.34
42DAP/reference0.813770.016
43DAP/reference0.824180.087
47DAP/reference0.871810.013
52DAP/reference0.833180.055
57DAP/reference0.863470.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047420.709
17DAP/reference0.943890.444
27DAP/reference1.047540.179
39DAP/reference1.492860.275
41DAP/reference0.892440.04
42DAP/reference0.989010.816
43DAP/reference0.877470.179
47DAP/reference0.891810.02
52DAP/reference0.766880.142
57DAP/reference0.941170.38

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012121
26DAP/20DAP1.536750.46
34DAP/26DAP1.202471
51DAP/34DAP1.780360.597
52DAP/51DAP1.240480.842
53DAP/52DAP1.007740.891
55DAP/53DAP1.833010.317
57DAP/55DAP0.892960.623
62DAP/57DAP1.182550.257
68DAP/62DAP1.00510.863
68DAP/14DAP1.580310.063

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.289650.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.869790.243
IL2-6/WTpooled0.972741
IL7-5/WTpooled1.049831
IL7-3/WTpooled0.901391
IL12-4/WTpooled0.928450.71
IL1-4/WTpooled0.855660.476
WT/WTpooled0.950741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.87326

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.25840.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.92111
DC3000/delta hrp 24h1.106870.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99251
Var 0h0.691610.223
Var 12h I row2-row11.58820.544
Var 12h NI row2-row10.850010.317
Var 36h I row2-row11.068910.298
Var 36h NI row2-row10.887770.743
Var 60h I row2-row11.174240.319
Var 60h NI row2-row10.917320.932
Time course 0hI-0hNI1.030290.867
Time course 12hI-12hNI0.848570.161
Time course 36hI-36hNI0.820150.028
Time course 60hI-60hNI0.604340.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.888411
transgenic ySAMdc/azygous control (red)1.093830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.065150.069

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.097971

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.888951
Manapal/WT (red)0.84260.274