Expression of 1-1-3.4.16.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97851 | 0.752 |
27DAP/17DAP | 1.98911 | 0.208 |
39DAP/27DAP | 3.83695 | 0.02 |
41DAP/39DAP | 1.35499 | 0.591 |
42DAP/41DAP | 1.17851 | 0.772 |
43DAP/42DAP | 1.31389 | 0.505 |
47DAP/43DAP | 1.73406 | 0.187 |
52DAP/47DAP | 0.79782 | 0.502 |
57DAP/52DAP | 2.13696 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.5688 | 0.027 |
17DAP/reference | 0.50917 | 0.007 |
27DAP/reference | 0.69144 | 0.017 |
39DAP/reference | 1.26903 | 0.786 |
41DAP/reference | 0.75908 | 0.065 |
42DAP/reference | 1.40824 | 0.016 |
43DAP/reference | 1.23939 | 0.031 |
47DAP/reference | 2.59779 | 0.001 |
52DAP/reference | 1.51386 | 0.019 |
57DAP/reference | 1.43471 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19836 | 0.326 |
27DAP/17DAP | 1.16025 | 0.724 |
39DAP/27DAP | 2.44103 | 0.06 |
41DAP/39DAP | 0.54716 | 0.169 |
42DAP/41DAP | 0.97542 | 0.753 |
43DAP/42DAP | 0.97751 | 0.854 |
47DAP/43DAP | 1.2787 | 0.471 |
52DAP/47DAP | 0.9765 | 0.886 |
57DAP/52DAP | 1.35931 | 0.533 |
57DAP/7DAP | 2.78554 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.54286 | 0.052 |
17DAP/reference | 0.43932 | 0.011 |
27DAP/reference | 0.75744 | 0.035 |
39DAP/reference | 0.94836 | 0.354 |
41DAP/reference | 1.25263 | 0.141 |
42DAP/reference | 1.30191 | 0.059 |
43DAP/reference | 1.0182 | 1 |
47DAP/reference | 1.24387 | 0.133 |
52DAP/reference | 1.81515 | 0.007 |
57DAP/reference | 3.19744 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.35364 | 0.004 |
17DAP/reference | 0.46155 | 0.003 |
27DAP/reference | 0.68435 | 0.027 |
39DAP/reference | 0.75695 | 0.034 |
41DAP/reference | 1.17829 | 0.153 |
42DAP/reference | 1.21643 | 0.094 |
43DAP/reference | 0.89409 | 0.298 |
47DAP/reference | 3.86492 | 0.008 |
52DAP/reference | 1.32033 | 0.006 |
57DAP/reference | 1.76733 | 0.01 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.58678 | 0.028 |
17DAP/reference | 0.61063 | 0.082 |
27DAP/reference | 0.87024 | 0.23 |
39DAP/reference | 1.37649 | 0.052 |
41DAP/reference | 1.24951 | 0.033 |
42DAP/reference | 1.274 | 0.111 |
43DAP/reference | 1.35601 | 0.069 |
47DAP/reference | 2.66471 | 0.005 |
52DAP/reference | 2.55355 | 0.028 |
57DAP/reference | 1.38107 | 0.104 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12024 | 0.966 |
26DAP/20DAP | 1.1512 | 0.713 |
34DAP/26DAP | 1.48089 | 0.542 |
51DAP/34DAP | 3.31177 | 0.021 |
52DAP/51DAP | 0.71595 | 0.151 |
53DAP/52DAP | 1.68334 | 0.028 |
55DAP/53DAP | 0.51681 | 0.022 |
57DAP/55DAP | 0.87402 | 0.475 |
62DAP/57DAP | 2.62211 | 0.003 |
68DAP/62DAP | 0.98542 | 0.81 |
68DAP/14DAP | 2.48295 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87137 | 0.083 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.03 | 0.036 |
Mature Green Tomato/Ripe Tomato | 0.30318 | 0.017 |
Immature Eggplant/Mature Eggplant | 54.6533 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.97103 | 1 |
Mature Eggplant/Ripe Tomato | 0.45181 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87459 | 0.616 |
1-1-2/M82 | 1.42306 | 1 |
12-2/M82 | 1.08595 | 1 |
12-4/M82 | 1.17905 | 1 |
1-3/M82 | 4.04888 | 0.277 |
2-1-1/M82 | 0.97216 | 1 |
2-1/M82 | 1.11167 | 1 |
2-6/M82 | 1.2577 | 0.374 |
3-2/M82 | 1.01413 | 1 |
4-1-1/M82 | 2.02948 | 1 |
4-1/M82 | 1.53293 | 1 |
4-3-2/M82 | 2.26901 | 0.508 |
4-3/M82 | 1.0666 | 1 |
5-3/M82 | 0.51326 | 0.49 |
6-2/M82 | 0.68533 | |
6-3/M82 | 1.17693 | 1 |
7-1/M82 | 0.95123 | 0.509 |
7-2/M82 | 2.36231 | 0.324 |
9-3-2/M82 | 2.11991 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00526 | |
IL2-6/WTpooled | 0.92678 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.12097 | 1 |
IL12-4/WTpooled | 1.23604 | 0.785 |
IL1-4/WTpooled | 1.59011 | 1 |
WT/WTpooled | 0.94339 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.47477 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91186 | 1 |
DC3000/delta hrp 6h | 0.74992 | 0.95 |
DC3000/delta hrp 12h | 1.40566 | 1 |
DC3000/delta hrp 24h | 0.90379 | 0.464 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82685 | 0.629 |
DC3000 delta B/DC3000 delta AB | 1.44408 | 0.234 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14767 | 1 |
Exp 36h | 1.14266 | 1 |
Exp 60h | 1.01894 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97855 | 1 |
Var 0h | 0.93523 | 1 |
Var 12h I row2-row1 | 0.85578 | 0.514 |
Var 12h NI row2-row1 | 1.36092 | 0.649 |
Var 36h I row2-row1 | 1.09859 | 1 |
Var 36h NI row2-row1 | 0.78757 | 0.61 |
Var 60h I row2-row1 | 0.53564 | 0.285 |
Var 60h NI row2-row1 | 0.65738 | 0.306 |
Time course 0hI-0hNI | 1.15074 | 0.377 |
Time course 12hI-12hNI | 1.37617 | 0.113 |
Time course 36hI-36hNI | 3.40533 | 0.005 |
Time course 60hI-60hNI | 10.158 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.55166 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.02505 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12079 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.62827 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75046 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 7.05021 | 0.096 |
Manapal/WT (break) | 4.85084 | 0.183 |
Manapal/WT (red) | 1.4475 | 0.15 |
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