Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-3.4.3.17

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.637	0.04
27DAP/17DAP	0.78026	0.593
39DAP/27DAP	0.8996	0.608
41DAP/39DAP	1.11015	0.833
42DAP/41DAP	1.52031	0.671
43DAP/42DAP	1.10726	1
47DAP/43DAP	0.98414	0.84
52DAP/47DAP	1.01769	0.783
57DAP/52DAP	1.07199	1

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95479	0.578
17DAP/reference	0.97907	0.904
27DAP/reference	0.9892	0.847
39DAP/reference	0.96892	N/A
41DAP/reference	0.83786	0.008
42DAP/reference	1.16933	0.001
43DAP/reference	N/A	N/A
47DAP/reference	1.11463	0.075
52DAP/reference	0.97636	0.58
57DAP/reference	0.16659	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.66761	0.03
27DAP/17DAP	1.11089	0.798
39DAP/27DAP	1.28062	0.347
41DAP/39DAP	1.01178	0.997
42DAP/41DAP	1.37807	0.087
43DAP/42DAP	0.51815	0.022
47DAP/43DAP	1.07915	0.833
52DAP/47DAP	5.22071	0.036
57DAP/52DAP	6.99084	0.041
57DAP/7DAP	14.3227	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.62975	0.025
17DAP/reference	3.93213	0.006
27DAP/reference	3.25329	0.006
39DAP/reference	4.54294	0.005
41DAP/reference	4.33145	0.01
42DAP/reference	5.00587	0.006
43DAP/reference	5.49583	0.006
47DAP/reference	5.19209	0.014
52DAP/reference	4.24555	0.007
57DAP/reference	3.7163	0.004

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.17725	0.21
17DAP/reference	0.90097	0.164
27DAP/reference	1.02085	1
39DAP/reference	1.16066	0.164
41DAP/reference	1.00881	1
42DAP/reference	1.0881	0.422
43DAP/reference	0.80819	0.191
47DAP/reference	1.00124	0.79
52DAP/reference	1.11146	0.3
57DAP/reference	1.0489	0.353

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.70041	0.015
17DAP/reference	2.47234	0.013
27DAP/reference	3.63164	0.012
39DAP/reference	3.10192	0.004
41DAP/reference	2.93015	0.006
42DAP/reference	2.93997	0.01
43DAP/reference	3.02486	0.013
47DAP/reference	1.01752	0.68
52DAP/reference	3.87445	0.067
57DAP/reference	5.20845	0.268

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.95404	1
26DAP/20DAP	13.454	0.66
34DAP/26DAP	3.81859	1
51DAP/34DAP	2.10563	1
52DAP/51DAP	4.47081	0.094
53DAP/52DAP	0.7718	0.073
55DAP/53DAP	1.15247	0.111
57DAP/55DAP	0.40392	0.08
62DAP/57DAP	1.20771	0.569
68DAP/62DAP	1.66801	0.984
68DAP/14DAP	2.0183	0.249

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.06399	0.019

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.45273	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.17345	N/A
1-1-2/M82	0.96559	N/A
12-2/M82	1.05554	N/A
12-4/M82	1.00443	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	0.94577	N/A
3-2/M82	0.75594	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	0.65478	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.81056	0.321
IL2-6/WTpooled	1.17958	0.584
IL7-5/WTpooled	1.04158	1
IL7-3/WTpooled	1.11041	1
IL12-4/WTpooled	1.06737	0.516
IL1-4/WTpooled	0.94767	0.699
WT/WTpooled	1.00338	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.84996	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.04327	0.921
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.98926	1
DC3000/delta hrp 24h	0.96401	0.782

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.2838	0.044
DC3000 delta B/DC3000 delta AB	1.33004	0.215

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.9955	1
Var 0h	0.992	1
Var 12h I row2-row1	0.57845	0.467
Var 12h NI row2-row1	1.06193	1
Var 36h I row2-row1	1.10464	1
Var 36h NI row2-row1	2.58296	1
Var 60h I row2-row1	0.49654	0.285
Var 60h NI row2-row1	0.75072	0.483
Time course 0hI-0hNI	0.90099	0.527
Time course 12hI-12hNI	1.26244	0.381
Time course 36hI-36hNI	0.73484	0.121
Time course 60hI-60hNI	1.30268	0.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.94382	0.567
transgenic ySAMdc/azygous control (breaker)	0.61892	0.131
transgenic ySAMdc/azygous control (red)	1.05071	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.10282	0.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.42618	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.80742	1
Manapal/WT (break)	0.9423	1
Manapal/WT (red)	0.79286	0.216