Expression of 1-1-3.4.8.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.37783 | 0.325 |
27DAP/17DAP | 1.41717 | 0.815 |
39DAP/27DAP | 1.44746 | 0.195 |
41DAP/39DAP | 0.74175 | 0.168 |
42DAP/41DAP | 0.99744 | 1 |
43DAP/42DAP | 0.99965 | 0.937 |
47DAP/43DAP | 0.95465 | 0.821 |
52DAP/47DAP | 0.66656 | 0.199 |
57DAP/52DAP | 1.05879 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83345 | 0.115 |
17DAP/reference | 1.12119 | 0.083 |
27DAP/reference | 1.07953 | 0.306 |
39DAP/reference | 1.1788 | 0.068 |
41DAP/reference | 0.96301 | 0.434 |
42DAP/reference | 0.89311 | 0.004 |
43DAP/reference | 0.99383 | 0.84 |
47DAP/reference | 1.05297 | 0.215 |
52DAP/reference | 0.94495 | 0.36 |
57DAP/reference | 0.99911 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.82641 | 0.046 |
27DAP/17DAP | 0.74471 | 0.135 |
39DAP/27DAP | 0.93285 | 0.54 |
41DAP/39DAP | 0.90583 | 0.68 |
42DAP/41DAP | 1.28713 | 0.095 |
43DAP/42DAP | 1.27524 | 0.212 |
47DAP/43DAP | 0.88611 | 0.286 |
52DAP/47DAP | 1.02632 | 0.986 |
57DAP/52DAP | 1.21518 | 0.333 |
57DAP/7DAP | 1.18064 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80143 | 0.091 |
17DAP/reference | 1.07955 | 0.971 |
27DAP/reference | 0.88869 | 0.048 |
39DAP/reference | 1.20386 | 0.252 |
41DAP/reference | 0.95789 | 0.394 |
42DAP/reference | 1.29137 | 0.308 |
43DAP/reference | 1.17109 | 0.241 |
47DAP/reference | 1.17208 | 0.091 |
52DAP/reference | 1.00753 | 0.74 |
57DAP/reference | 1.0488 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94243 | 0.532 |
17DAP/reference | 0.92828 | 0.26 |
27DAP/reference | 1.14476 | 0.352 |
39DAP/reference | 0.89307 | 0.126 |
41DAP/reference | 0.90304 | 0.152 |
42DAP/reference | 1.04361 | 0.843 |
43DAP/reference | 1.05389 | 0.761 |
47DAP/reference | 0.96401 | 0.359 |
52DAP/reference | 0.78975 | 0.014 |
57DAP/reference | 0.90077 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03902 | 0.864 |
17DAP/reference | 1.03087 | 0.699 |
27DAP/reference | 0.97 | 0.465 |
39DAP/reference | 0.99247 | 0.693 |
41DAP/reference | 1.18095 | 0.054 |
42DAP/reference | 1.20125 | 0.204 |
43DAP/reference | 1.13534 | 0.625 |
47DAP/reference | 1.50076 | 0.008 |
52DAP/reference | 1.2358 | 0.146 |
57DAP/reference | 1.32337 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01925 | 0.966 |
26DAP/20DAP | 1.23572 | 0.394 |
34DAP/26DAP | 1.11824 | 1 |
51DAP/34DAP | 0.94601 | 0.688 |
52DAP/51DAP | 0.99543 | 1 |
53DAP/52DAP | 1.01333 | 0.978 |
55DAP/53DAP | 0.9683 | 0.807 |
57DAP/55DAP | 1.54216 | 0.222 |
62DAP/57DAP | 1.18259 | 0.303 |
68DAP/62DAP | 1.13849 | 0.872 |
68DAP/14DAP | 0.74704 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.03417 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.28872 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.40192 | 0.166 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.62129 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.06378 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.23653 | 0.473 |
1-1-2/M82 | 0.99877 | 1 |
12-2/M82 | 0.89694 | 0.955 |
12-4/M82 | 1.11376 | 1 |
1-3/M82 | 0.90036 | 0.378 |
2-1-1/M82 | 0.85736 | 0.92 |
2-1/M82 | 0.72881 | |
2-6/M82 | 1.15946 | 0.352 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.9139 | 1 |
4-1/M82 | 1.49448 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.07108 | 1 |
5-3/M82 | 0.90263 | 1 |
6-2/M82 | 0.96553 | 1 |
6-3/M82 | 0.83949 | 0.916 |
7-1/M82 | 1.00281 | 1 |
7-2/M82 | 1.17575 | 1 |
9-3-2/M82 | 1.17617 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06962 | 1 |
IL2-6/WTpooled | 1.17119 | 0.456 |
IL7-5/WTpooled | 0.67741 | 1 |
IL7-3/WTpooled | 0.93367 | 0.418 |
IL12-4/WTpooled | 0.98094 | 0.71 |
IL1-4/WTpooled | 1.08751 | 1 |
WT/WTpooled | 0.99066 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8738 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09239 | 0.846 |
DC3000/delta hrp 6h | 0.33676 | |
DC3000/delta hrp 12h | 1.47165 | 1 |
DC3000/delta hrp 24h | 1.14612 | 0.322 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.28937 | |
DC3000 delta B/DC3000 delta AB | 1.03736 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.30447 | 0.227 |
Exp 36h | 0.86137 | 0.699 |
Exp 60h | 0.98336 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9678 | 1 |
Var 0h | 1.65155 | 0.594 |
Var 12h I row2-row1 | 1.03317 | 0.736 |
Var 12h NI row2-row1 | 1.06885 | 1 |
Var 36h I row2-row1 | 1.2961 | 0.368 |
Var 36h NI row2-row1 | 0.99792 | 0.852 |
Var 60h I row2-row1 | 0.82011 | 0.582 |
Var 60h NI row2-row1 | 0.97751 | 1 |
Time course 0hI-0hNI | 1.0194 | 1 |
Time course 12hI-12hNI | 1.00096 | 1 |
Time course 36hI-36hNI | 1.02263 | 0.857 |
Time course 60hI-60hNI | 0.76151 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89943 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.6447 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.20491 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97045 | 0.136 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.31934 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.10846 | 0.083 |
Manapal/WT (break) | 3.30915 | 0.14 |
Manapal/WT (red) | 2.57347 | 0.126 |
|
|