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Expression of 1-1-3.4.8.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.377830.325
27DAP/17DAP1.417170.815
39DAP/27DAP1.447460.195
41DAP/39DAP0.741750.168
42DAP/41DAP0.997441
43DAP/42DAP0.999650.937
47DAP/43DAP0.954650.821
52DAP/47DAP0.666560.199
57DAP/52DAP1.058790.93

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.833450.115
17DAP/reference1.121190.083
27DAP/reference1.079530.306
39DAP/reference1.17880.068
41DAP/reference0.963010.434
42DAP/reference0.893110.004
43DAP/reference0.993830.84
47DAP/reference1.052970.215
52DAP/reference0.944950.36
57DAP/reference0.999110.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.826410.046
27DAP/17DAP0.744710.135
39DAP/27DAP0.932850.54
41DAP/39DAP0.905830.68
42DAP/41DAP1.287130.095
43DAP/42DAP1.275240.212
47DAP/43DAP0.886110.286
52DAP/47DAP1.026320.986
57DAP/52DAP1.215180.333
57DAP/7DAP1.180641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.801430.091
17DAP/reference1.079550.971
27DAP/reference0.888690.048
39DAP/reference1.203860.252
41DAP/reference0.957890.394
42DAP/reference1.291370.308
43DAP/reference1.171090.241
47DAP/reference1.172080.091
52DAP/reference1.007530.74
57DAP/reference1.04881

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942430.532
17DAP/reference0.928280.26
27DAP/reference1.144760.352
39DAP/reference0.893070.126
41DAP/reference0.903040.152
42DAP/reference1.043610.843
43DAP/reference1.053890.761
47DAP/reference0.964010.359
52DAP/reference0.789750.014
57DAP/reference0.900770.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.039020.864
17DAP/reference1.030870.699
27DAP/reference0.970.465
39DAP/reference0.992470.693
41DAP/reference1.180950.054
42DAP/reference1.201250.204
43DAP/reference1.135340.625
47DAP/reference1.500760.008
52DAP/reference1.23580.146
57DAP/reference1.323370.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019250.966
26DAP/20DAP1.235720.394
34DAP/26DAP1.118241
51DAP/34DAP0.946010.688
52DAP/51DAP0.995431
53DAP/52DAP1.013330.978
55DAP/53DAP0.96830.807
57DAP/55DAP1.542160.222
62DAP/57DAP1.182590.303
68DAP/62DAP1.138490.872
68DAP/14DAP0.747040.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.034170.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.288720.068
Mature Green Tomato/Ripe Tomato1.401920.166
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.621290.258
Mature Eggplant/Ripe Tomato0.063780.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.236530.473
1-1-2/M820.998771
12-2/M820.896940.955
12-4/M821.113761
1-3/M820.900360.378
2-1-1/M820.857360.92
2-1/M820.72881N/A
2-6/M821.159460.352
3-2/M82N/AN/A
4-1-1/M820.91391
4-1/M821.494481
4-3-2/M82N/AN/A
4-3/M821.071081
5-3/M820.902631
6-2/M820.965531
6-3/M820.839490.916
7-1/M821.002811
7-2/M821.175751
9-3-2/M821.176171

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.069621
IL2-6/WTpooled1.171190.456
IL7-5/WTpooled0.677411
IL7-3/WTpooled0.933670.418
IL12-4/WTpooled0.980940.71
IL1-4/WTpooled1.087511
WT/WTpooled0.990661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.87380.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.092390.846
DC3000/delta hrp 6h0.33676N/A
DC3000/delta hrp 12h1.471651
DC3000/delta hrp 24h1.146120.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.28937N/A
DC3000 delta B/DC3000 delta AB1.037360.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.304470.227
Exp 36h0.861370.699
Exp 60h0.983360.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96781
Var 0h1.651550.594
Var 12h I row2-row11.033170.736
Var 12h NI row2-row11.068851
Var 36h I row2-row11.29610.368
Var 36h NI row2-row10.997920.852
Var 60h I row2-row10.820110.582
Var 60h NI row2-row10.977511
Time course 0hI-0hNI1.01941
Time course 12hI-12hNI1.000961
Time course 36hI-36hNI1.022630.857
Time course 60hI-60hNI0.761510.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.899430.338
transgenic ySAMdc/azygous control (breaker)1.64470.178
transgenic ySAMdc/azygous control (red)1.204910.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.970450.136

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.319340.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.108460.083
Manapal/WT (break)3.309150.14
Manapal/WT (red)2.573470.126