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Expression of 1-1-3.4.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.749650.037
27DAP/17DAP0.815770.529
39DAP/27DAP1.504510.139
41DAP/39DAP0.659550.049
42DAP/41DAP1.105310.908
43DAP/42DAP0.975030.912
47DAP/43DAP0.99650.89
52DAP/47DAP0.726510.381
57DAP/52DAP1.454580.737

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.969050.007
17DAP/reference1.218250.318
27DAP/reference0.81790.036
39DAP/reference0.946360.5
41DAP/reference1.170970.145
42DAP/reference1.559550.001
43DAP/reference1.415190.012
47DAP/reference1.169950.148
52DAP/reference0.78880.048
57DAP/reference1.078180.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.197290.161
27DAP/17DAP0.935950.821
39DAP/27DAP0.8040.087
41DAP/39DAP1.238490.773
42DAP/41DAP1.025851
43DAP/42DAP0.997481
47DAP/43DAP1.004511
52DAP/47DAP0.818450.166
57DAP/52DAP1.079110.598
57DAP/7DAP0.850921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.021970.024
17DAP/reference1.795590.008
27DAP/reference1.71290.006
39DAP/reference1.533050.015
41DAP/reference1.552540.009
42DAP/reference1.293370.132
43DAP/reference1.355170.014
47DAP/reference1.462190.015
52DAP/reference1.815810.012
57DAP/reference1.844040.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.625060.043
17DAP/reference1.726490.007
27DAP/reference1.466320.018
39DAP/reference1.649640.011
41DAP/reference1.381860.005
42DAP/reference1.505650.008
43DAP/reference1.351410.188
47DAP/reference1.752380.008
52DAP/reference1.082540.343
57DAP/reference1.287160.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.119270.015
17DAP/reference1.361490.215
27DAP/reference1.486350.026
39DAP/reference1.514660.005
41DAP/reference1.427440.009
42DAP/reference1.567040.007
43DAP/reference1.585420.006
47DAP/reference1.131810.155
52DAP/reference1.945560.03
57DAP/reference1.045240.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.119680.966
26DAP/20DAP2.040290.177
34DAP/26DAP0.933080.841
51DAP/34DAP1.060880.936
52DAP/51DAP0.722471
53DAP/52DAP1.239920.284
55DAP/53DAP0.939320.709
57DAP/55DAP1.515180.311
62DAP/57DAP0.957980.871
68DAP/62DAP0.908170.747
68DAP/14DAP0.698210.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.889490.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.139020.075
Mature Green Tomato/Ripe Tomato1.159130.577
Immature Eggplant/Mature Eggplant1.020480.528
Ripe Pepper/Ripe Tomato1.61940.258
Mature Eggplant/Ripe Tomato1.292771

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.862440.934
1-1-2/M820.985561
12-2/M820.748920.678
12-4/M820.760550.358
1-3/M821.319180.479
2-1-1/M820.779390.465
2-1/M820.931531
2-6/M820.890540.501
3-2/M821.024911
4-1-1/M821.094171
4-1/M820.8795N/A
4-3-2/M821.34980.508
4-3/M821.445970.268
5-3/M821.45120.436
6-2/M821.061241
6-3/M821.203321
7-1/M821.082481
7-2/M821.127010.385
9-3-2/M821.234810.191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.849040.247
IL2-6/WTpooled0.994971
IL7-5/WTpooled1.17948N/A
IL7-3/WTpooled1.214471
IL12-4/WTpooled1.009411
IL1-4/WTpooled1.067431
WT/WTpooled0.973711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.73720.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.095820.724
DC3000/delta hrp 6h0.962190.95
DC3000/delta hrp 12h1.050351
DC3000/delta hrp 24h1.183320.271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.093870.313
DC3000 delta B/DC3000 delta AB1.358030.177

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.818091
Exp 36h1.268481
Exp 60h1.125491

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.936271
Var 0h1.220070.936
Var 12h I row2-row11.008841
Var 12h NI row2-row11.304180.649
Var 36h I row2-row11.238140.298
Var 36h NI row2-row10.645450.329
Var 60h I row2-row10.953830.582
Var 60h NI row2-row10.777910.292
Time course 0hI-0hNI0.859750.205
Time course 12hI-12hNI1.051510.672
Time course 36hI-36hNI1.517990.035
Time course 60hI-60hNI1.733190.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.978210.722
transgenic ySAMdc/azygous control (breaker)1.10.248
transgenic ySAMdc/azygous control (red)1.211130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.293040.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.115181

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.04480.307
Manapal/WT (break)1.200631
Manapal/WT (red)0.989480.863