Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-4.1.16.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.12816	0.739
27DAP/17DAP	1.15371	0.833
39DAP/27DAP	0.87495	0.512
41DAP/39DAP	1.25327	0.569
42DAP/41DAP	1.10962	0.916
43DAP/42DAP	1.14873	0.864
47DAP/43DAP	1.11333	0.668
52DAP/47DAP	0.76344	0.42
57DAP/52DAP	1.11543	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99563	0.743
17DAP/reference	0.96461	0.419
27DAP/reference	0.95323	0.215
39DAP/reference	0.97077	0.565
41DAP/reference	0.9773	0.542
42DAP/reference	1.0191	0.609
43DAP/reference	1.06417	0.382
47DAP/reference	1.06065	0.085
52DAP/reference	0.9651	0.371
57DAP/reference	1.12773	0.018

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98071	0.732
27DAP/17DAP	1.09033	0.699
39DAP/27DAP	1.01406	0.845
41DAP/39DAP	0.93963	0.875
42DAP/41DAP	0.9857	0.774
43DAP/42DAP	1.07364	0.446
47DAP/43DAP	1.03717	0.857
52DAP/47DAP	1.01734	0.945
57DAP/52DAP	1.03128	0.906
57DAP/7DAP	0.96384	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95759	0.157
17DAP/reference	0.98875	0.389
27DAP/reference	0.9474	0.037
39DAP/reference	0.98275	0.146
41DAP/reference	1.00659	1
42DAP/reference	1.05507	0.059
43DAP/reference	0.97721	0.166
47DAP/reference	0.99144	0.671
52DAP/reference	1.01136	0.781
57DAP/reference	0.99801	0.719

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96238	0.487
17DAP/reference	0.9722	0.287
27DAP/reference	0.92637	0.093
39DAP/reference	0.96856	0.289
41DAP/reference	0.92333	0.218
42DAP/reference	0.98324	0.594
43DAP/reference	1.01536	1
47DAP/reference	0.95307	0.188
52DAP/reference	0.98101	0.327
57DAP/reference	0.98462	0.61

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01027	0.758
17DAP/reference	0.96098	0.234
27DAP/reference	1.02465	0.695
39DAP/reference	0.94746	0.026
41DAP/reference	0.97421	0.148
42DAP/reference	0.98045	0.552
43DAP/reference	1.00663	0.973
47DAP/reference	1.06089	0.066
52DAP/reference	1.06534	0.526
57DAP/reference	1.00228	1

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.03445	0.966
26DAP/20DAP	0.94519	1
34DAP/26DAP	1.05883	0.819
51DAP/34DAP	0.98939	0.901
52DAP/51DAP	1.0347	0.776
53DAP/52DAP	1.03329	0.921
55DAP/53DAP	1.04653	0.771
57DAP/55DAP	0.92308	0.596
62DAP/57DAP	1.05194	0.678
68DAP/62DAP	0.87971	0.227
68DAP/14DAP	0.95199	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.78605	0.033

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.8875	0.401
Mature Green Tomato/Ripe Tomato	1.14754	0.715
Immature Eggplant/Mature Eggplant	1.56408	0.051
Ripe Pepper/Ripe Tomato	0.94967	1
Mature Eggplant/Ripe Tomato	0.84265	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.92906	0.944
1-1-2/M82	1.20882	0.972
12-2/M82	1.15904	1
12-4/M82	1.01688	1
1-3/M82	1.18393	1
2-1-1/M82	0.90583	N/A
2-1/M82	0.73947	0.519
2-6/M82	1.13417	0.452
3-2/M82	1.02933	N/A
4-1-1/M82	1.06483	1
4-1/M82	1.02882	0.328
4-3-2/M82	1.02624	1
4-3/M82	1.25965	0.268
5-3/M82	0.96647	1
6-2/M82	1.08665	N/A
6-3/M82	0.91558	1
7-1/M82	0.81162	N/A
7-2/M82	1.12861	0.385
9-3-2/M82	0.94797	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.68598	0.201

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.02076	1
DC3000/delta hrp 6h	1.0096	0.95
DC3000/delta hrp 12h	0.89573	1
DC3000/delta hrp 24h	1.20379	0.074

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.83344	0.161
DC3000 delta B/DC3000 delta AB	0.86147	0.1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.2937	0.254
Exp 36h	1.02852	1
Exp 60h	1.05667	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.98584	1
Var 0h	0.39599	1
Var 12h I row2-row1	0.82994	0.467
Var 12h NI row2-row1	0.9774	0.906
Var 36h I row2-row1	0.94255	0.805
Var 36h NI row2-row1	1.1173	1
Var 60h I row2-row1	1.11824	0.543
Var 60h NI row2-row1	1.04404	1
Time course 0hI-0hNI	1.09157	0.603
Time course 12hI-12hNI	0.98466	0.909
Time course 36hI-36hNI	0.88936	0.066
Time course 60hI-60hNI	0.36757	0.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.8228	0.246
transgenic ySAMdc/azygous control (breaker)	0.67779	0.142
transgenic ySAMdc/azygous control (red)	1.11545	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.00325	0.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.89529	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	2.13562	0.105
Manapal/WT (break)	2.0453	0.183
Manapal/WT (red)	0.95603	0.863