Expression of 1-1-4.1.17.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19267 | 0.901 |
27DAP/17DAP | 2.06419 | 0.362 |
39DAP/27DAP | 0.70273 | 0.458 |
41DAP/39DAP | 1.3295 | 0.715 |
42DAP/41DAP | 0.87285 | 1 |
43DAP/42DAP | 5.21107 | 0.02 |
47DAP/43DAP | 0.41286 | 0.049 |
52DAP/47DAP | 1.22903 | 0.869 |
57DAP/52DAP | 0.94671 | 0.932 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.90562 | 0.014 |
17DAP/reference | 0.78524 | 0.111 |
27DAP/reference | 0.79093 | 0.109 |
39DAP/reference | 0.68278 | 0.02 |
41DAP/reference | 0.70455 | 0.039 |
42DAP/reference | 1.01738 | 0.707 |
43DAP/reference | 0.57771 | 0.013 |
47DAP/reference | 0.59954 | 0.001 |
52DAP/reference | 0.60706 | 0.019 |
57DAP/reference | 0.59633 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79565 | 0.376 |
27DAP/17DAP | 4.2237 | 0.02 |
39DAP/27DAP | 0.69568 | 0.057 |
41DAP/39DAP | 0.46588 | 0.013 |
42DAP/41DAP | 0.97093 | 0.743 |
43DAP/42DAP | 1.15536 | 0.324 |
47DAP/43DAP | 1.11202 | 0.765 |
52DAP/47DAP | 2.2837 | 0.05 |
57DAP/52DAP | 1.46368 | 0.197 |
57DAP/7DAP | 1.22698 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76632 | 0.115 |
17DAP/reference | 0.71832 | 0.028 |
27DAP/reference | 1.0294 | 1 |
39DAP/reference | 0.67483 | 0.017 |
41DAP/reference | 0.81964 | 0.107 |
42DAP/reference | 1.04274 | 0.612 |
43DAP/reference | 1.08929 | 0.603 |
47DAP/reference | 0.8631 | 0.293 |
52DAP/reference | 0.65397 | 0.012 |
57DAP/reference | 0.95565 | 0.353 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.60824 | 0.069 |
17DAP/reference | 1.37138 | 0.081 |
27DAP/reference | 1.14408 | 0.552 |
39DAP/reference | 0.70627 | 0.062 |
41DAP/reference | 1.03301 | 1 |
42DAP/reference | 0.99599 | 0.655 |
43DAP/reference | 0.79688 | 0.035 |
47DAP/reference | 0.83753 | 0.051 |
52DAP/reference | 0.64394 | 0.005 |
57DAP/reference | 0.80871 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75308 | 0.052 |
17DAP/reference | 0.88374 | 0.243 |
27DAP/reference | 0.82697 | 0.085 |
39DAP/reference | 0.67226 | 0.015 |
41DAP/reference | 0.74184 | 0.043 |
42DAP/reference | 1.24069 | 0.158 |
43DAP/reference | 0.88631 | 0.237 |
47DAP/reference | 0.53307 | 0.005 |
52DAP/reference | 0.99923 | 0.482 |
57DAP/reference | 0.73477 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82768 | 1 |
26DAP/20DAP | 0.95519 | 1 |
34DAP/26DAP | 1.36771 | 0.819 |
51DAP/34DAP | 1.17628 | 0.73 |
52DAP/51DAP | 1.89332 | 0.036 |
53DAP/52DAP | 0.96076 | 0.862 |
55DAP/53DAP | 1.07365 | 0.976 |
57DAP/55DAP | 1.20923 | 0.955 |
62DAP/57DAP | 1.18629 | 0.217 |
68DAP/62DAP | 1.00025 | 0.863 |
68DAP/14DAP | 1.18579 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93058 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.18039 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.8275 | 0.347 |
Immature Eggplant/Mature Eggplant | 0.75933 | 0.254 |
Ripe Pepper/Ripe Tomato | 0.36644 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.76911 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17344 | 0.742 |
1-1-2/M82 | 0.96018 | 0.804 |
12-2/M82 | 0.79182 | |
12-4/M82 | 1.4983 | 1 |
1-3/M82 | 0.82768 | |
2-1-1/M82 | 0.73113 | |
2-1/M82 | 0.75317 | |
2-6/M82 | 1.11909 | 0.329 |
3-2/M82 | 0.97431 | |
4-1-1/M82 | 0.88093 | |
4-1/M82 | 1.38657 | |
4-3-2/M82 | 0.75311 | |
4-3/M82 | 1.27744 | 0.268 |
5-3/M82 | 1.14052 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.64285 | |
7-1/M82 | 0.93621 | |
7-2/M82 | 1.09725 | 0.385 |
9-3-2/M82 | 1.00259 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90143 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.80284 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.78615 | |
IL1-4/WTpooled | 1.24396 | 0.399 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02528 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99647 | 1 |
DC3000/delta hrp 6h | 0.88964 | 0.95 |
DC3000/delta hrp 12h | 0.77188 | 1 |
DC3000/delta hrp 24h | 0.92456 | 0.534 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10807 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.0925 | 0.449 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87246 | 1 |
Exp 36h | 0.7163 | 0.623 |
Exp 60h | 1.06425 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03011 | 1 |
Var 0h | 1.07308 | 1 |
Var 12h I row2-row1 | 1.0411 | 0.283 |
Var 12h NI row2-row1 | 1.10229 | 1 |
Var 36h I row2-row1 | 1.27403 | 0.489 |
Var 36h NI row2-row1 | 0.93656 | 0.791 |
Var 60h I row2-row1 | 0.97296 | |
Var 60h NI row2-row1 | 1.11701 | 0.904 |
Time course 0hI-0hNI | 1.03476 | 0.833 |
Time course 12hI-12hNI | 0.92789 | 0.272 |
Time course 36hI-36hNI | 0.90516 | 0.076 |
Time course 60hI-60hNI | 0.4491 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18304 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.54855 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.75653 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.21923 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.63438 | 0.084 |
Manapal/WT (break) | 0.69843 | 1 |
Manapal/WT (red) | 1.7906 | 0.222 |
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