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Expression of 1-1-4.1.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.058870.912
27DAP/17DAP1.351390.688
39DAP/27DAP1.11570.907
41DAP/39DAP1.387630.398
42DAP/41DAP1.005191
43DAP/42DAP0.810350.456
47DAP/43DAP1.062320.943
52DAP/47DAP1.528390.307
57DAP/52DAP1.003440.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971490.539
17DAP/reference0.98160.819
27DAP/reference0.976070.711
39DAP/reference0.93770.663
41DAP/reference1.027260.855
42DAP/reference1.23780.001
43DAP/reference0.73729N/A
47DAP/reference1.247340.001
52DAP/reference1.265210.008
57DAP/reference0.22096N/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049170.785
27DAP/17DAP0.992360.943
39DAP/27DAP0.903350.173
41DAP/39DAP1.207540.371
42DAP/41DAP0.86380.109
43DAP/42DAP1.053310.382
47DAP/43DAP1.012151
52DAP/47DAP0.916130.753
57DAP/52DAP1.062120.941
57DAP/7DAP0.869951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00511
17DAP/reference1.053150.328
27DAP/reference1.02110.664
39DAP/reference1.051650.333
41DAP/reference1.099510.363
42DAP/reference1.155130.021
43DAP/reference0.978930.421
47DAP/reference1.099290.353
52DAP/reference0.977810.278
57DAP/reference1.03020.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.133520.154
17DAP/reference1.113320.278
27DAP/reference1.208510.034
39DAP/reference1.021991
41DAP/reference1.166770.209
42DAP/reference1.239970.061
43DAP/reference1.463210.014
47DAP/reference1.335120.013
52DAP/reference1.1630.034
57DAP/reference1.05020.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.224180.659
17DAP/reference1.016321
27DAP/reference1.014031
39DAP/reference0.959330.393
41DAP/reference1.19050.265
42DAP/reference1.684790.016
43DAP/reference1.505130.017
47DAP/reference1.282030.023
52DAP/reference1.663730.079
57DAP/reference1.258820.037

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.109750.966
26DAP/20DAP1.173320.587
34DAP/26DAP1.348730.304
51DAP/34DAP2.017890.084
52DAP/51DAP0.918751
53DAP/52DAP1.092320.797
55DAP/53DAP0.928110.604
57DAP/55DAP0.78580.219
62DAP/57DAP0.772680.028
68DAP/62DAP1.246240.713
68DAP/14DAP1.889060.019

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.427530.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.438920.081
Mature Green Tomato/Ripe Tomato0.728940.107
Immature Eggplant/Mature Eggplant2.444830.05
Ripe Pepper/Ripe Tomato5.80160.256
Mature Eggplant/Ripe Tomato0.333421

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.086990.877
1-1-2/M821.38006N/A
12-2/M821.20231N/A
12-4/M821.114270.563
1-3/M820.77634N/A
2-1-1/M821.23656N/A
2-1/M821.48651N/A
2-6/M820.977651
3-2/M820.8202N/A
4-1-1/M820.882871
4-1/M82N/AN/A
4-3-2/M820.95273N/A
4-3/M821.421230.268
5-3/M821.065411
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.58555N/A
7-2/M820.94694N/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.63571N/A
IL12-4/WTpooled0.759061
IL1-4/WTpooled0.957571
WT/WTpooled1.2857N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.854260.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984021
DC3000/delta hrp 6h0.778970.942
DC3000/delta hrp 12h1.016281
DC3000/delta hrp 24h1.141310.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.645760.024
DC3000 delta B/DC3000 delta AB0.532980.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.220820.254
Exp 36h1.501170.371
Exp 60h1.570010.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980331
Var 0h1.018541
Var 12h I row2-row10.930450.353
Var 12h NI row2-row10.997621
Var 36h I row2-row10.940361
Var 36h NI row2-row10.926120.61
Var 60h I row2-row11.193450.543
Var 60h NI row2-row10.903850.818
Time course 0hI-0hNI1.018710.867
Time course 12hI-12hNI1.040430.774
Time course 36hI-36hNI1.040710.355
Time course 60hI-60hNI0.423810.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.029821
transgenic ySAMdc/azygous control (breaker)0.865460.49
transgenic ySAMdc/azygous control (red)0.966831

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.073010.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.075721

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.922831
Manapal/WT (break)0.808851
Manapal/WT (red)0.895590.424