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Expression of 1-1-4.1.8.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.056750.904
27DAP/17DAP1.21230.852
39DAP/27DAP0.759280.421
41DAP/39DAP1.020950.921
42DAP/41DAP1.175190.773
43DAP/42DAP1.118241
47DAP/43DAP1.240320.727
52DAP/47DAP0.699190.241
57DAP/52DAP1.013610.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.861570.162
17DAP/reference1.057690.412
27DAP/reference0.921360.484
39DAP/reference0.965740.663
41DAP/reference0.868010.085
42DAP/reference0.985820.455
43DAP/reference0.932030.48
47DAP/reference1.051220.963
52DAP/reference1.041821
57DAP/reference1.062020.548

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.935760.428
27DAP/17DAP1.070420.811
39DAP/27DAP1.17490.383
41DAP/39DAP1.080951
42DAP/41DAP1.065180.694
43DAP/42DAP1.022751
47DAP/43DAP1.071870.758
52DAP/47DAP1.045220.826
57DAP/52DAP0.975810.742
57DAP/7DAP0.951211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.341250.046
17DAP/reference1.152040.627
27DAP/reference1.185270.371
39DAP/reference1.068420.705
41DAP/reference1.166030.171
42DAP/reference1.100710.686
43DAP/reference1.011920.665
47DAP/reference0.941060.504
52DAP/reference0.909770.196
57DAP/reference1.040761

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920760.318
17DAP/reference0.99480.786
27DAP/reference0.912260.282
39DAP/reference1.201020.366
41DAP/reference0.981310.451
42DAP/reference0.849130.073
43DAP/reference0.901490.217
47DAP/reference0.951060.27
52DAP/reference1.10780.444
57DAP/reference0.934840.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.11240.366
17DAP/reference1.013430.934
27DAP/reference1.056750.695
39DAP/reference1.056870.437
41DAP/reference1.105670.296
42DAP/reference0.963870.552
43DAP/reference1.071950.426
47DAP/reference0.90760.269
52DAP/reference1.175340.542
57DAP/reference1.015370.939

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.427120.56
26DAP/20DAP0.898580.512
34DAP/26DAP1.127280.819
51DAP/34DAP0.959340.727
52DAP/51DAP1.038470.758
53DAP/52DAP1.039580.935
55DAP/53DAP1.075150.712
57DAP/55DAP1.051190.975
62DAP/57DAP1.06790.569
68DAP/62DAP0.97620.863
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.939980.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.871740.256
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.47309N/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.939940.944
1-1-2/M821.038131
12-2/M821.141111
12-4/M821.015521
1-3/M820.78190.501
2-1-1/M82N/AN/A
2-1/M821.127991
2-6/M821.069120.695
3-2/M820.90476N/A
4-1-1/M820.930431
4-1/M821.22777N/A
4-3-2/M820.97221
4-3/M820.884041
5-3/M820.931260.642
6-2/M820.78934N/A
6-3/M821.115621
7-1/M821.060111
7-2/M820.999861
9-3-2/M820.97749N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.597440.493
IL2-6/WTpooled0.167910.358
IL7-5/WTpooled1.1331
IL7-3/WTpooled0.784271
IL12-4/WTpooled3.488790.516
IL1-4/WTpooled0.366480.415
WT/WTpooled1.043561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.205610.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.014961
DC3000/delta hrp 6h1.505741
DC3000/delta hrp 12h1.217781
DC3000/delta hrp 24h1.1460.09

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.32345N/A
DC3000 delta B/DC3000 delta AB0.942190.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.957961
Exp 36h0.995351
Exp 60h1.169481

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007041
Var 0h0.97414N/A
Var 12h I row2-row10.966320.344
Var 12h NI row2-row10.944220.906
Var 36h I row2-row11.022971
Var 36h NI row2-row10.953350.791
Var 60h I row2-row16.732361
Var 60h NI row2-row11.356360.904
Time course 0hI-0hNI1.034840.852
Time course 12hI-12hNI1.034530.741
Time course 36hI-36hNI0.988450.644
Time course 60hI-60hNI0.873620.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.096570.372
transgenic ySAMdc/azygous control (breaker)1.247410.248
transgenic ySAMdc/azygous control (red)1.04770.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.02420.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.015321

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.931341
Manapal/WT (break)1.262950.183
Manapal/WT (red)0.793890.216