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Expression of 1-1-4.2.1.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.761890.153
27DAP/17DAP1.202590.791
39DAP/27DAP1.082631
41DAP/39DAP1.085930.715
42DAP/41DAP1.095930.886
43DAP/42DAP1.143380.968
47DAP/43DAP0.856970.546
52DAP/47DAP1.064920.891
57DAP/52DAP0.721840.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.976290.562
17DAP/reference1.051580.355
27DAP/reference1.085860.091
39DAP/reference1.128120.074
41DAP/reference1.03420.808
42DAP/reference0.992770.517
43DAP/reference0.993320.861
47DAP/reference1.050850.306
52DAP/reference1.003321
57DAP/reference0.989530.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.903580.363
27DAP/17DAP0.938520.724
39DAP/27DAP0.971670.812
41DAP/39DAP0.931580.804
42DAP/41DAP0.919030.529
43DAP/42DAP1.164930.147
47DAP/43DAP0.964250.843
52DAP/47DAP1.094640.666
57DAP/52DAP1.138250.533
57DAP/7DAP1.236261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052960.491
17DAP/reference0.970890.295
27DAP/reference1.108770.03
39DAP/reference1.102220.029
41DAP/reference1.054350.577
42DAP/reference1.061840.686
43DAP/reference1.281340.432
47DAP/reference1.035930.868
52DAP/reference1.036540.732
57DAP/reference0.965910.302

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124240.184
17DAP/reference1.087130.415
27DAP/reference0.98920.642
39DAP/reference1.074060.588
41DAP/reference1.046740.72
42DAP/reference0.96880.433
43DAP/reference1.101760.38
47DAP/reference0.984970.512
52DAP/reference0.981350.433
57DAP/reference0.998520.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.077470.122
17DAP/reference1.071750.42
27DAP/reference1.186290.061
39DAP/reference1.033480.633
41DAP/reference1.086540.425
42DAP/reference1.071330.34
43DAP/reference0.98030.614
47DAP/reference1.062420.355
52DAP/reference0.985930.781
57DAP/reference1.014290.909

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.949811
26DAP/20DAP0.628480.512
34DAP/26DAP0.83043N/A
51DAP/34DAP0.975480.863
52DAP/51DAP1.019020.939
53DAP/52DAP0.843770.527
55DAP/53DAP1.216180.722
57DAP/55DAP1.024161
62DAP/57DAP1.086490.868
68DAP/62DAP0.683370.406
68DAP/14DAP0.687590.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.751440.184

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.578970.058
Mature Green Tomato/Ripe Tomato0.488250.06
Immature Eggplant/Mature Eggplant0.879970.105
Ripe Pepper/Ripe Tomato0.818851
Mature Eggplant/Ripe Tomato1.263951

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.062991
1-1-2/M820.993271
12-2/M821.227931
12-4/M821.517680.611
1-3/M821.001841
2-1-1/M821.42532N/A
2-1/M82N/AN/A
2-6/M821.040381
3-2/M821.53414N/A
4-1-1/M820.934611
4-1/M821.0408N/A
4-3-2/M821.432621
4-3/M820.647470.46
5-3/M821.022731
6-2/M820.38323N/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.554060.578
9-3-2/M820.900511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.170670.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.106641
IL7-3/WTpooled1.416731
IL12-4/WTpooled1.02930.503
IL1-4/WTpooled0.98781
WT/WTpooled1.194260.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.881820.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.937481
DC3000/delta hrp 6h0.79980.95
DC3000/delta hrp 12h1.002051
DC3000/delta hrp 24h0.927940.543

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.4059N/A
DC3000 delta B/DC3000 delta AB0.4211N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.901511
Exp 36h0.722860.406
Exp 60h0.65520.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99521
Var 0h0.794131
Var 12h I row2-row10.875640.338
Var 12h NI row2-row11.034721
Var 36h I row2-row10.666811
Var 36h NI row2-row11.510781
Var 60h I row2-row10.735630.832
Var 60h NI row2-row11.097820.904
Time course 0hI-0hNI0.935980.519
Time course 12hI-12hNI0.935670.426
Time course 36hI-36hNI0.741230.023
Time course 60hI-60hNI0.375990.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.931620.314
transgenic ySAMdc/azygous control (breaker)1.205550.178
transgenic ySAMdc/azygous control (red)1.167140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026950.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.962140.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.084450.14
Manapal/WT (break)1.336110.381
Manapal/WT (red)1.181780.15