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Expression of 1-1-4.2.2.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.346020.24
27DAP/17DAP0.942760.913
39DAP/27DAP1.396710.212
41DAP/39DAP0.610930.045
42DAP/41DAP0.943911
43DAP/42DAP1.04631
47DAP/43DAP0.76770.269
52DAP/47DAP0.938240.783
57DAP/52DAP1.093950.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.328950.015
17DAP/reference1.148950.026
27DAP/reference1.26340.014
39DAP/reference1.239410.014
41DAP/reference1.094160.365
42DAP/reference1.16830.005
43DAP/reference1.157080.118
47DAP/reference1.456230.001
52DAP/reference1.119180.217
57DAP/reference1.09840.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.663870.036
27DAP/17DAP0.955690.684
39DAP/27DAP0.76750.063
41DAP/39DAP1.345590.763
42DAP/41DAP0.986670.795
43DAP/42DAP0.717790.023
47DAP/43DAP0.96740.757
52DAP/47DAP0.945740.624
57DAP/52DAP0.888530.334
57DAP/7DAP0.778571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.300790.16
17DAP/reference1.144620.244
27DAP/reference1.072550.804
39DAP/reference1.300040.114
41DAP/reference1.183160.075
42DAP/reference1.250120.174
43DAP/reference0.95590.241
47DAP/reference1.400760.047
52DAP/reference1.085420.636
57DAP/reference1.116750.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08460.43
17DAP/reference1.53580.007
27DAP/reference1.232340.053
39DAP/reference1.3840.013
41DAP/reference1.143220.106
42DAP/reference1.160750.157
43DAP/reference1.249330.121
47DAP/reference1.214470.014
52DAP/reference1.231810.036
57DAP/reference1.326870.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222650.066
17DAP/reference1.131180.412
27DAP/reference1.060410.425
39DAP/reference1.037480.67
41DAP/reference1.122220.145
42DAP/reference1.290780.035
43DAP/reference1.311640.067
47DAP/reference1.220330.021
52DAP/reference1.299680.132
57DAP/reference1.078850.56

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.030331
26DAP/20DAP1.211430.471
34DAP/26DAP1.02921
51DAP/34DAP1.092240.654
52DAP/51DAP0.944741
53DAP/52DAP1.19070.806
55DAP/53DAP1.059320.994
57DAP/55DAP1.244210.07
62DAP/57DAP1.192810.868
68DAP/62DAP0.89320.109
68DAP/14DAP1.086431

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.825930.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.894730.418
Mature Green Tomato/Ripe Tomato1.830030.209
Immature Eggplant/Mature Eggplant0.819270.292
Ripe Pepper/Ripe Tomato1.72491
Mature Eggplant/Ripe Tomato0.910941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.170280.877
1-1-2/M821.255950.977
12-2/M820.70107N/A
12-4/M821.071211
1-3/M821.27788N/A
2-1-1/M820.913090.465
2-1/M820.70014N/A
2-6/M821.141530.329
3-2/M821.011811
4-1-1/M821.41271
4-1/M821.20565N/A
4-3-2/M821.394650.241
4-3/M821.605560.268
5-3/M821.083531
6-2/M821.25154N/A
6-3/M820.59232N/A
7-1/M821.07386N/A
7-2/M821.15708N/A
9-3-2/M821.419491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.962731
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.030711
IL12-4/WTpooled1.089180.673
IL1-4/WTpooled1.01233N/A
WT/WTpooled1.023131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.977731

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.087590.921
DC3000/delta hrp 6h1.055271
DC3000/delta hrp 12h0.972881
DC3000/delta hrp 24h0.979140.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.045150.441
DC3000 delta B/DC3000 delta AB0.995241

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.987481
Exp 36h1.080071
Exp 60h1.058941

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978841
Var 0h0.554960.259
Var 12h I row2-row10.965970.948
Var 12h NI row2-row11.095371
Var 36h I row2-row11.116860.742
Var 36h NI row2-row10.893010.61
Var 60h I row2-row10.959410.952
Var 60h NI row2-row10.836240.572
Time course 0hI-0hNI0.97180.858
Time course 12hI-12hNI0.95610.501
Time course 36hI-36hNI1.000210.811
Time course 60hI-60hNI1.079450.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.008170.654
transgenic ySAMdc/azygous control (breaker)1.076061
transgenic ySAMdc/azygous control (red)0.929881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.082510.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.867960.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.752961
Manapal/WT (break)0.886081
Manapal/WT (red)1.097750.413