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Expression of 1-1-4.2.6.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.740670.073
27DAP/17DAP1.399250.546
39DAP/27DAP1.315270.444
41DAP/39DAP0.801330.299
42DAP/41DAP1.163530.903
43DAP/42DAP0.921450.813
47DAP/43DAP1.139170.316
52DAP/47DAP1.310030.545
57DAP/52DAP0.96980.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.895610.087
17DAP/reference1.149550.027
27DAP/reference1.061250.548
39DAP/reference1.173570.061
41DAP/reference1.148640.085
42DAP/reference0.945260.188
43DAP/reference0.965170.394
47DAP/reference0.957890.242
52DAP/reference0.870450.108
57DAP/reference0.814070.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.533380.037
27DAP/17DAP0.77220.418
39DAP/27DAP1.354410.253
41DAP/39DAP1.210721
42DAP/41DAP1.010371
43DAP/42DAP0.95030.308
47DAP/43DAP0.958750.787
52DAP/47DAP0.961360.807
57DAP/52DAP0.905370.399
57DAP/7DAP1.416230.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.930830.445
17DAP/reference1.038460.688
27DAP/reference1.420710.008
39DAP/reference1.104810.282
41DAP/reference1.015351
42DAP/referenceN/AN/A
43DAP/reference1.046990.603
47DAP/reference1.126070.493
52DAP/reference1.513150.007
57DAP/reference1.552950.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058420.687
17DAP/reference1.133680.181
27DAP/reference1.035161
39DAP/reference1.033430.745
41DAP/reference1.023141
42DAP/reference0.905010.169
43DAP/reference1.447310.023
47DAP/reference0.982820.512
52DAP/reference1.107860.135
57DAP/reference1.230860.06

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.820730.082
17DAP/reference0.950790.499
27DAP/reference0.888260.092
39DAP/reference1.01510.935
41DAP/reference1.041320.796
42DAP/reference1.114070.743
43DAP/reference0.699740.023
47DAP/reference0.974930.509
52DAP/reference1.120690.369
57DAP/reference0.777310.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092070.966
26DAP/20DAP0.853331
34DAP/26DAP1.014311
51DAP/34DAP1.026410.949
52DAP/51DAP1.019061
53DAP/52DAP1.018240.91
55DAP/53DAP1.075510.415
57DAP/55DAP1.259310.543
62DAP/57DAP0.746910.05
68DAP/62DAP0.940320.7
68DAP/14DAP0.781691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.63270.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.02455N/A
Mature Green Tomato/Ripe Tomato1.222460.399
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.01221N/A
Mature Eggplant/Ripe Tomato0.578770.231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.09610.877
1-1-2/M821.126310.972
12-2/M821.064151
12-4/M821.220081
1-3/M821.173191
2-1-1/M821.022551
2-1/M821.051421
2-6/M820.923051
3-2/M821.515180.549
4-1-1/M820.89081
4-1/M821.16399N/A
4-3-2/M821.299040.284
4-3/M821.361830.268
5-3/M821.016841
6-2/M820.87148N/A
6-3/M820.964581
7-1/M821.12512N/A
7-2/M821.16851
9-3-2/M821.431461

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.268N/A
IL2-6/WTpooled0.8871
IL7-5/WTpooled0.943831
IL7-3/WTpooled1.096030.362
IL12-4/WTpooled0.889060.566
IL1-4/WTpooled1.045861
WT/WTpooled0.997831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.979661

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987831
DC3000/delta hrp 6h0.857170.95
DC3000/delta hrp 12h1.106791
DC3000/delta hrp 24h1.034560.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.36754N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.921571
Exp 36h0.989620.879
Exp 60h1.09981

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.965421
Var 0h1.123461
Var 12h I row2-row11.15990.406
Var 12h NI row2-row11.014851
Var 36h I row2-row10.839871
Var 36h NI row2-row11.178350.482
Var 60h I row2-row11.048531
Var 60h NI row2-row10.945331
Time course 0hI-0hNI1.020220.852
Time course 12hI-12hNI0.929090.49
Time course 36hI-36hNI0.794370.025
Time course 60hI-60hNI0.958830.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.945220.454
transgenic ySAMdc/azygous control (breaker)0.960361
transgenic ySAMdc/azygous control (red)0.96281

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008390.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.943290.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.707530.172
Manapal/WT (break)0.999811
Manapal/WT (red)0.896850.242