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Expression of 1-1-4.2.6.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033580.904
27DAP/17DAP1.119430.86
39DAP/27DAP1.187750.601
41DAP/39DAP1.12330.624
42DAP/41DAP1.308710.632
43DAP/42DAP1.157650.864
47DAP/43DAP0.827950.449
52DAP/47DAP1.337570.333
57DAP/52DAP0.825260.71

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.988490.55
17DAP/reference0.984490.63
27DAP/reference1.870150.021
39DAP/reference1.649920.593
41DAP/reference0.896730.341
42DAP/reference8.523920.001
43DAP/reference5.000760.006
47DAP/reference4.554620.001
52DAP/reference2.624710.008
57DAP/reference1.808040.015

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.047931
27DAP/17DAP1.039831
39DAP/27DAP1.019060.811
41DAP/39DAP0.872190.63
42DAP/41DAP1.117890.635
43DAP/42DAP1.136370.413
47DAP/43DAP1.027410.941
52DAP/47DAP1.008790.969
57DAP/52DAP1.05020.925
57DAP/7DAP1.156860.153

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.039730.031
17DAP/reference2.462080.006
27DAP/reference1.408090.015
39DAP/reference4.925020.005
41DAP/reference2.475030.01
42DAP/reference2.968170.016
43DAP/reference1.796410.006
47DAP/reference3.890980.015
52DAP/reference1.47250.016
57DAP/reference1.148620.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.649910.007
17DAP/reference0.962840.51
27DAP/reference1.186040.171
39DAP/reference1.255090.22
41DAP/reference1.675260.006
42DAP/reference1.49240.099
43DAP/reference1.600750.122
47DAP/reference1.609670.041
52DAP/reference0.871510.034
57DAP/reference1.173890.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.350760.021
17DAP/reference1.519870.665
27DAP/reference1.637330.023
39DAP/reference2.76910.011
41DAP/reference1.940990.007
42DAP/reference1.877570.134
43DAP/reference4.08660.03
47DAP/reference3.418560.005
52DAP/reference1.735130.436
57DAP/reference2.928550.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.975051
26DAP/20DAP0.935641
34DAP/26DAP1.03391
51DAP/34DAP0.901210.587
52DAP/51DAP1.10280.86
53DAP/52DAP0.939990.741
55DAP/53DAP1.246840.05
57DAP/55DAP1.065190.906
62DAP/57DAP1.109620.833
68DAP/62DAP0.934280.429
68DAP/14DAP1.055150.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.119821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.44156N/A
Mature Green Tomato/Ripe Tomato0.609590.072
Immature Eggplant/Mature Eggplant0.444520.062
Ripe Pepper/Ripe Tomato0.448170.293
Mature Eggplant/Ripe Tomato0.353581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014251
1-1-2/M820.794320.804
12-2/M821.050271
12-4/M820.887871
1-3/M820.79518N/A
2-1-1/M821.12816N/A
2-1/M82N/AN/A
2-6/M821.001221
3-2/M821.15777N/A
4-1-1/M821.072041
4-1/M821.07185N/A
4-3-2/M820.775520.487
4-3/M820.813020.611
5-3/M821.022161
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.095211
9-3-2/M820.947590.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.760481
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.10541
IL12-4/WTpooled0.822030.71
IL1-4/WTpooled1.009881
WT/WTpooled1.052931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.128620.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068680.921
DC3000/delta hrp 6h0.889550.95
DC3000/delta hrp 12h1.012041
DC3000/delta hrp 24h1.067660.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.32308N/A
DC3000 delta B/DC3000 delta AB0.758620.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.854350.265
Exp 36h0.837130.699
Exp 60h0.881270.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996171
Var 0h0.854790.933
Var 12h I row2-row11.082640.379
Var 12h NI row2-row10.855810.403
Var 36h I row2-row10.987651
Var 36h NI row2-row10.877610.61
Var 60h I row2-row11.217080.562
Var 60h NI row2-row11.193650.904
Time course 0hI-0hNI1.033760.799
Time course 12hI-12hNI0.996551
Time course 36hI-36hNI0.957020.28
Time course 60hI-60hNI1.109490.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.060530.654
transgenic ySAMdc/azygous control (breaker)3.086180.178
transgenic ySAMdc/azygous control (red)1.178160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.149420.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.476090.105
Manapal/WT (break)1.010651
Manapal/WT (red)0.94090.424