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Expression of 1-1-4.3.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.717160.098
27DAP/17DAP1.085790.889
39DAP/27DAP1.491210.361
41DAP/39DAP1.112950.708
42DAP/41DAP0.85341
43DAP/42DAP0.826250.456
47DAP/43DAP0.999710.913
52DAP/47DAP1.180250.943
57DAP/52DAP1.076440.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.04430.48
17DAP/reference1.090340.066
27DAP/reference1.051350.478
39DAP/reference1.050670.335
41DAP/reference1.191530.019
42DAP/reference0.991320.517
43DAP/reference1.14750.118
47DAP/reference0.963340.258
52DAP/reference0.868420.093
57DAP/reference0.690690.015

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969750.716
27DAP/17DAP1.07390.928
39DAP/27DAP0.840280.394
41DAP/39DAP1.181520.603
42DAP/41DAP0.872990.312
43DAP/42DAP0.920010.482
47DAP/43DAP1.153270.245
52DAP/47DAP0.978190.905
57DAP/52DAP1.559770.451
57DAP/7DAP2.111371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902130.157
17DAP/reference0.972440.338
27DAP/reference1.003370.656
39DAP/reference1.05591
41DAP/reference1.138880.745
42DAP/reference0.880280.111
43DAP/reference0.951890.421
47DAP/reference0.943180.504
52DAP/reference0.918750.232
57DAP/reference0.957350.367

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.072670.531
17DAP/reference1.007020.747
27DAP/reference1.046990.781
39DAP/reference1.077770.556
41DAP/reference1.029210.752
42DAP/reference0.888660.089
43DAP/reference1.017170.787
47DAP/reference1.107380.19
52DAP/reference1.034330.882
57DAP/reference1.083440.771

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936210.249
17DAP/reference1.007040.87
27DAP/reference1.114470.425
39DAP/reference1.045990.528
41DAP/reference0.973790.618
42DAP/reference0.923040.287
43DAP/reference0.84280.073
47DAP/reference0.980750.525
52DAP/reference1.446330.694
57DAP/reference0.805320.075

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.268060.916
26DAP/20DAP0.755950.512
34DAP/26DAP1.995121
51DAP/34DAP1.57919N/A
52DAP/51DAP1.138870.13
53DAP/52DAP0.88850.64
55DAP/53DAP1.334890.266
57DAP/55DAP1.117590.906
62DAP/57DAP0.830170.002
68DAP/62DAP2.481710.017
68DAP/14DAP0.97341

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.143230.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.928270.539
Mature Green Tomato/Ripe Tomato0.264790.017
Immature Eggplant/Mature Eggplant1.651760.05
Ripe Pepper/Ripe Tomato1.619160.258
Mature Eggplant/Ripe Tomato0.92441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.966891
12-2/M82N/AN/A
12-4/M820.926970.358
1-3/M821.46989N/A
2-1-1/M821.04762N/A
2-1/M82N/AN/A
2-6/M820.952391
3-2/M820.84746N/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.65030.578
5-3/M821.848010.572
6-2/M82N/AN/A
6-3/M820.974231
7-1/M821.69681N/A
7-2/M821.443920.263
9-3-2/M821.0552N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.897531
IL2-6/WTpooled1.148341
IL7-5/WTpooled0.820841
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.974291
IL1-4/WTpooledN/AN/A
WT/WTpooled0.975361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.196770.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083320.894
DC3000/delta hrp 6h1.050231
DC3000/delta hrp 12h1.010231
DC3000/delta hrp 24h0.584580.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.976131
Exp 36h1.046821
Exp 60h1.04211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029791
Var 0h0.785070.332
Var 12h I row2-row11.119570.58
Var 12h NI row2-row11.268720.649
Var 36h I row2-row11.196540.368
Var 36h NI row2-row11.152971
Var 60h I row2-row10.88130.285
Var 60h NI row2-row10.999781
Time course 0hI-0hNI1.110130.719
Time course 12hI-12hNI1.059320.785
Time course 36hI-36hNI1.439380.011
Time course 60hI-60hNI1.538350.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.014350.921
transgenic ySAMdc/azygous control (breaker)0.843840.15
transgenic ySAMdc/azygous control (red)0.88591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.092270.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.273580.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.710010.084
Manapal/WT (break)1.329260.381
Manapal/WT (red)0.884750.424