Expression of 1-1-4.3.3.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03141 | 0.977 |
27DAP/17DAP | 0.83836 | 0.606 |
39DAP/27DAP | 1.26812 | 0.841 |
41DAP/39DAP | 1.17001 | 0.715 |
42DAP/41DAP | 0.9086 | 1 |
43DAP/42DAP | 0.99304 | 0.937 |
47DAP/43DAP | 1.45385 | 0.355 |
52DAP/47DAP | 1.39951 | 0.681 |
57DAP/52DAP | 1.24025 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91733 | 0.3 |
17DAP/reference | 0.80629 | 0.018 |
27DAP/reference | 0.97332 | 0.654 |
39DAP/reference | 0.95451 | 0.5 |
41DAP/reference | 0.81383 | 0.012 |
42DAP/reference | 0.9501 | 0.115 |
43DAP/reference | 0.89468 | 0.148 |
47DAP/reference | 1.04592 | 0.84 |
52DAP/reference | 1.24823 | 0.045 |
57DAP/reference | 1.24603 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92051 | 0.35 |
27DAP/17DAP | 0.91101 | 0.39 |
39DAP/27DAP | 1.08773 | 0.611 |
41DAP/39DAP | 1.09113 | 0.909 |
42DAP/41DAP | 1.06493 | 1 |
43DAP/42DAP | 1.03039 | 0.554 |
47DAP/43DAP | 1.01099 | 0.998 |
52DAP/47DAP | 0.97825 | 0.902 |
57DAP/52DAP | 1.06596 | 0.722 |
57DAP/7DAP | 1.06868 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22028 | 0.088 |
17DAP/reference | 1.4804 | 0.009 |
27DAP/reference | 1.13908 | 0.664 |
39DAP/reference | 1.50132 | 0.009 |
41DAP/reference | 1.36664 | 0.614 |
42DAP/reference | 1.68805 | 0.024 |
43DAP/reference | 1.4189 | 0.011 |
47DAP/reference | 1.01056 | 1 |
52DAP/reference | 1.29053 | 0.352 |
57DAP/reference | 1.33731 | 0.033 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05776 | 0.943 |
17DAP/reference | 1.03165 | 0.941 |
27DAP/reference | 0.94658 | 0.292 |
39DAP/reference | 1.16016 | 0.225 |
41DAP/reference | 1.19967 | 0.166 |
42DAP/reference | 1.11614 | 0.5 |
43DAP/reference | 1.04061 | 0.801 |
47DAP/reference | 0.94031 | 0.141 |
52DAP/reference | 1.16555 | 0.023 |
57DAP/reference | 0.94216 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21586 | 0.273 |
17DAP/reference | 1.15219 | 0.699 |
27DAP/reference | 1.41123 | 0.027 |
39DAP/reference | 1.31953 | 0.039 |
41DAP/reference | 1.37544 | 0.072 |
42DAP/reference | 1.32742 | 0.016 |
43DAP/reference | 1.28649 | 0.139 |
47DAP/reference | 1.00908 | 0.708 |
52DAP/reference | 1.16736 | 0.443 |
57DAP/reference | 1.63753 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12651 | 0.966 |
26DAP/20DAP | 0.84215 | 0.317 |
34DAP/26DAP | 1.51029 | 0.819 |
51DAP/34DAP | 0.97467 | 0.844 |
52DAP/51DAP | 1.0031 | 1 |
53DAP/52DAP | 1.11618 | 0.783 |
55DAP/53DAP | 1.0221 | 0.994 |
57DAP/55DAP | 1.16955 | 0.947 |
62DAP/57DAP | 1.0114 | |
68DAP/62DAP | 1.56438 | 0.253 |
68DAP/14DAP | 1.49594 | 0.05 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78243 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.4658 | 0.058 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.92836 | 0.808 |
Ripe Pepper/Ripe Tomato | 1.44077 | |
Mature Eggplant/Ripe Tomato | 0.87104 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18725 | 0.591 |
1-1-2/M82 | 1.14368 | |
12-2/M82 | 1.24547 | 1 |
12-4/M82 | 1.24783 | 0.611 |
1-3/M82 | 0.72929 | 0.378 |
2-1-1/M82 | 0.84386 | |
2-1/M82 | 0.83639 | |
2-6/M82 | 0.92083 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.86009 | 0.668 |
4-1/M82 | 1.52865 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.33325 | 1 |
5-3/M82 | 1.4412 | 1 |
6-2/M82 | 0.66983 | |
6-3/M82 | 1.03504 | 1 |
7-1/M82 | 0.7454 | |
7-2/M82 | 0.75492 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96601 | 1 |
IL2-6/WTpooled | 0.71169 | 0.348 |
IL7-5/WTpooled | 1.26802 | 0.792 |
IL7-3/WTpooled | 0.89038 | 0.293 |
IL12-4/WTpooled | 0.72735 | 0.554 |
IL1-4/WTpooled | 1.01582 | 1 |
WT/WTpooled | 0.89062 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00868 | 1 |
DC3000/delta hrp 6h | 0.9925 | 0.95 |
DC3000/delta hrp 12h | 1.00783 | 1 |
DC3000/delta hrp 24h | 0.95013 | 0.736 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91344 | 1 |
Exp 36h | 0.85325 | 0.661 |
Exp 60h | 0.65093 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.86956 | |
Var 0h | 1.20571 | |
Var 12h I row2-row1 | 1.0656 | |
Var 12h NI row2-row1 | 0.95405 | 0.713 |
Var 36h I row2-row1 | 1.04217 | 0.489 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.04088 | 0.904 |
Time course 0hI-0hNI | 1.04361 | 0.867 |
Time course 12hI-12hNI | 0.91429 | 0.606 |
Time course 36hI-36hNI | 1.08713 | 0.218 |
Time course 60hI-60hNI | 0.75149 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0999 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 1.3731 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.20459 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97437 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92985 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72287 | 0.172 |
Manapal/WT (break) | 1.07215 | 1 |
Manapal/WT (red) | 0.94611 | 0.607 |
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