Expression of 1-1-4.3.3.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031410.977
27DAP/17DAP0.838360.606
39DAP/27DAP1.268120.841
41DAP/39DAP1.170010.715
42DAP/41DAP0.90861
43DAP/42DAP0.993040.937
47DAP/43DAP1.453850.355
52DAP/47DAP1.399510.681
57DAP/52DAP1.240250.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.917330.3
17DAP/reference0.806290.018
27DAP/reference0.973320.654
39DAP/reference0.954510.5
41DAP/reference0.813830.012
42DAP/reference0.95010.115
43DAP/reference0.894680.148
47DAP/reference1.045920.84
52DAP/reference1.248230.045
57DAP/reference1.246030.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920510.35
27DAP/17DAP0.911010.39
39DAP/27DAP1.087730.611
41DAP/39DAP1.091130.909
42DAP/41DAP1.064931
43DAP/42DAP1.030390.554
47DAP/43DAP1.010990.998
52DAP/47DAP0.978250.902
57DAP/52DAP1.065960.722
57DAP/7DAP1.068681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.220280.088
17DAP/reference1.48040.009
27DAP/reference1.139080.664
39DAP/reference1.501320.009
41DAP/reference1.366640.614
42DAP/reference1.688050.024
43DAP/reference1.41890.011
47DAP/reference1.010561
52DAP/reference1.290530.352
57DAP/reference1.337310.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057760.943
17DAP/reference1.031650.941
27DAP/reference0.946580.292
39DAP/reference1.160160.225
41DAP/reference1.199670.166
42DAP/reference1.116140.5
43DAP/reference1.040610.801
47DAP/reference0.940310.141
52DAP/reference1.165550.023
57DAP/reference0.942160.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.215860.273
17DAP/reference1.152190.699
27DAP/reference1.411230.027
39DAP/reference1.319530.039
41DAP/reference1.375440.072
42DAP/reference1.327420.016
43DAP/reference1.286490.139
47DAP/reference1.009080.708
52DAP/reference1.167360.443
57DAP/reference1.637530.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.126510.966
26DAP/20DAP0.842150.317
34DAP/26DAP1.510290.819
51DAP/34DAP0.974670.844
52DAP/51DAP1.00311
53DAP/52DAP1.116180.783
55DAP/53DAP1.02210.994
57DAP/55DAP1.169550.947
62DAP/57DAP1.0114
68DAP/62DAP1.564380.253
68DAP/14DAP1.495940.05

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.782430.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.46580.058
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.928360.808
Ripe Pepper/Ripe Tomato1.44077
Mature Eggplant/Ripe Tomato0.871041

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.187250.591
1-1-2/M821.14368
12-2/M821.245471
12-4/M821.247830.611
1-3/M820.729290.378
2-1-1/M820.84386
2-1/M820.83639
2-6/M820.920831
3-2/M82N/AN/A
4-1-1/M820.860090.668
4-1/M821.52865
4-3-2/M82N/AN/A
4-3/M821.333251
5-3/M821.44121
6-2/M820.66983
6-3/M821.035041
7-1/M820.7454
7-2/M820.754920.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.966011
IL2-6/WTpooled0.711690.348
IL7-5/WTpooled1.268020.792
IL7-3/WTpooled0.890380.293
IL12-4/WTpooled0.727350.554
IL1-4/WTpooled1.015821
WT/WTpooled0.890621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008681
DC3000/delta hrp 6h0.99250.95
DC3000/delta hrp 12h1.007831
DC3000/delta hrp 24h0.950130.736

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.913441
Exp 36h0.853250.661
Exp 60h0.650930.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.86956
Var 0h1.20571
Var 12h I row2-row11.0656
Var 12h NI row2-row10.954050.713
Var 36h I row2-row11.042170.489
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.040880.904
Time course 0hI-0hNI1.043610.867
Time course 12hI-12hNI0.914290.606
Time course 36hI-36hNI1.087130.218
Time course 60hI-60hNI0.751490.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.09990.326
transgenic ySAMdc/azygous control (breaker)1.37310.178
transgenic ySAMdc/azygous control (red)1.204590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974370.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.929850.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.722870.172
Manapal/WT (break)1.072151
Manapal/WT (red)0.946110.607