Expression of 1-1-4.3.3.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25566 | 0.315 |
27DAP/17DAP | 1.57385 | 0.353 |
39DAP/27DAP | 2.34757 | 0.449 |
41DAP/39DAP | 2.43206 | 0.321 |
42DAP/41DAP | 0.9683 | 1 |
43DAP/42DAP | 0.96508 | 0.909 |
47DAP/43DAP | 0.53068 | 0.049 |
52DAP/47DAP | 0.75325 | 0.41 |
57DAP/52DAP | 1.13689 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83037 | 0.06 |
17DAP/reference | 0.9964 | 0.904 |
27DAP/reference | 1.29812 | 0.096 |
39DAP/reference | 0.99616 | 0.901 |
41DAP/reference | 1.17798 | 0.05 |
42DAP/reference | 1.94118 | 0.029 |
43DAP/reference | 1.03861 | 1 |
47DAP/reference | 2.75344 | 0.001 |
52DAP/reference | 2.56132 | 0.007 |
57DAP/reference | 1.10623 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73696 | 0.27 |
27DAP/17DAP | 0.98596 | 0.919 |
39DAP/27DAP | 2.32587 | 0.046 |
41DAP/39DAP | 3.66197 | 0.017 |
42DAP/41DAP | 0.65557 | 0.016 |
43DAP/42DAP | 0.51627 | 0.02 |
47DAP/43DAP | 1.09329 | 0.552 |
52DAP/47DAP | 1.08687 | 0.831 |
57DAP/52DAP | 0.69807 | 0.289 |
57DAP/7DAP | 0.86536 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74061 | 0.067 |
17DAP/reference | 0.71952 | 0.021 |
27DAP/reference | 0.94238 | 0.283 |
39DAP/reference | 0.69974 | 0.034 |
41DAP/reference | 0.81121 | 0.111 |
42DAP/reference | 1.0421 | 0.889 |
43DAP/reference | 0.8111 | 0.012 |
47DAP/reference | 1.99984 | 0.292 |
52DAP/reference | 0.86846 | 0.057 |
57DAP/reference | 0.93037 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.5888 | 0.013 |
17DAP/reference | 1.08018 | 0.979 |
27DAP/reference | 2.78088 | 0.013 |
39DAP/reference | 2.62634 | 0.011 |
41DAP/reference | 2.2426 | 0.005 |
42DAP/reference | 2.57359 | 0.007 |
43DAP/reference | 1.30191 | 1 |
47DAP/reference | 2.23715 | 0.008 |
52DAP/reference | 1.614 | 0.007 |
57DAP/reference | 1.18692 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85327 | 0.214 |
17DAP/reference | 0.76499 | 0.121 |
27DAP/reference | 0.98708 | 0.566 |
39DAP/reference | 1.09646 | 0.935 |
41DAP/reference | 0.96027 | 0.459 |
42DAP/reference | 1.74451 | 0.279 |
43DAP/reference | 2.65998 | 0.241 |
47DAP/reference | 2.12989 | 0.037 |
52DAP/reference | 1.22711 | 0.583 |
57DAP/reference | 6.1316 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.2486 | 0.966 |
26DAP/20DAP | 1.3561 | 0.297 |
34DAP/26DAP | 1.53481 | 0.304 |
51DAP/34DAP | 1.53925 | 0.039 |
52DAP/51DAP | 0.96094 | 1 |
53DAP/52DAP | 1.65625 | 0.027 |
55DAP/53DAP | 1.11931 | 0.487 |
57DAP/55DAP | 2.18615 | 0.461 |
62DAP/57DAP | 0.91002 | 0.994 |
68DAP/62DAP | 1.2962 | 0.367 |
68DAP/14DAP | 2.86262 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89746 | 0.048 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7814 | 0.232 |
Mature Green Tomato/Ripe Tomato | 2.88656 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.53299 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.85228 | 1 |
Mature Eggplant/Ripe Tomato | 0.73941 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11352 | 0.574 |
1-1-2/M82 | 1.84493 | 1 |
12-2/M82 | 0.69856 | 0.862 |
12-4/M82 | 1.28484 | 1 |
1-3/M82 | 1.70938 | 0.277 |
2-1-1/M82 | 0.92435 | |
2-1/M82 | 1.58651 | 1 |
2-6/M82 | 1.46523 | 0.395 |
3-2/M82 | 2.05394 | 0.388 |
4-1-1/M82 | 1.65628 | 0.938 |
4-1/M82 | 0.80587 | |
4-3-2/M82 | 2.39955 | 0.508 |
4-3/M82 | 1.04571 | |
5-3/M82 | 1.66807 | 0.496 |
6-2/M82 | 5.17085 | 0.235 |
6-3/M82 | 1.264 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.3188 | |
9-3-2/M82 | 2.22024 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.66037 | 0.243 |
IL2-6/WTpooled | 1.00792 | |
IL7-5/WTpooled | 0.91881 | 1 |
IL7-3/WTpooled | 1.54345 | |
IL12-4/WTpooled | 1.10902 | 0.891 |
IL1-4/WTpooled | 0.9435 | 0.699 |
WT/WTpooled | 0.96305 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.93544 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97385 | 1 |
DC3000/delta hrp 6h | 1.02993 | 1 |
DC3000/delta hrp 12h | 1.35236 | 1 |
DC3000/delta hrp 24h | 0.92477 | 0.534 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.05398 | 0.042 |
DC3000 delta B/DC3000 delta AB | 3.8541 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07449 | 1 |
Exp 36h | 1.13102 | 1 |
Exp 60h | 1.24269 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98616 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.09751 | |
Var 12h NI row2-row1 | 1.55376 | |
Var 36h I row2-row1 | 1.94447 | 0.283 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 1.26938 | 0.63 |
Time course 12hI-12hNI | 1.24208 | 0.774 |
Time course 36hI-36hNI | 6.28981 | 0.004 |
Time course 60hI-60hNI | 63.95 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95796 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.81037 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.28915 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.5708 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92292 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.64389 | 1 |
Manapal/WT (break) | 0.90909 | 1 |
Manapal/WT (red) | 1.31191 | 1 |
|
|