Expression of 1-1-4.3.3.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.255660.315
27DAP/17DAP1.573850.353
39DAP/27DAP2.347570.449
41DAP/39DAP2.432060.321
42DAP/41DAP0.96831
43DAP/42DAP0.965080.909
47DAP/43DAP0.530680.049
52DAP/47DAP0.753250.41
57DAP/52DAP1.136890.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.830370.06
17DAP/reference0.99640.904
27DAP/reference1.298120.096
39DAP/reference0.996160.901
41DAP/reference1.177980.05
42DAP/reference1.941180.029
43DAP/reference1.038611
47DAP/reference2.753440.001
52DAP/reference2.561320.007
57DAP/reference1.10623

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.736960.27
27DAP/17DAP0.985960.919
39DAP/27DAP2.325870.046
41DAP/39DAP3.661970.017
42DAP/41DAP0.655570.016
43DAP/42DAP0.516270.02
47DAP/43DAP1.093290.552
52DAP/47DAP1.086870.831
57DAP/52DAP0.698070.289
57DAP/7DAP0.865361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.740610.067
17DAP/reference0.719520.021
27DAP/reference0.942380.283
39DAP/reference0.699740.034
41DAP/reference0.811210.111
42DAP/reference1.04210.889
43DAP/reference0.81110.012
47DAP/reference1.999840.292
52DAP/reference0.868460.057
57DAP/reference0.930370.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.58880.013
17DAP/reference1.080180.979
27DAP/reference2.780880.013
39DAP/reference2.626340.011
41DAP/reference2.24260.005
42DAP/reference2.573590.007
43DAP/reference1.301911
47DAP/reference2.237150.008
52DAP/reference1.6140.007
57DAP/reference1.186921

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853270.214
17DAP/reference0.764990.121
27DAP/reference0.987080.566
39DAP/reference1.096460.935
41DAP/reference0.960270.459
42DAP/reference1.744510.279
43DAP/reference2.659980.241
47DAP/reference2.129890.037
52DAP/reference1.227110.583
57DAP/reference6.13160.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.24860.966
26DAP/20DAP1.35610.297
34DAP/26DAP1.534810.304
51DAP/34DAP1.539250.039
52DAP/51DAP0.960941
53DAP/52DAP1.656250.027
55DAP/53DAP1.119310.487
57DAP/55DAP2.186150.461
62DAP/57DAP0.910020.994
68DAP/62DAP1.29620.367
68DAP/14DAP2.862620.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.897460.048

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.78140.232
Mature Green Tomato/Ripe Tomato2.886560.016
Immature Eggplant/Mature Eggplant1.532990.05
Ripe Pepper/Ripe Tomato1.852281
Mature Eggplant/Ripe Tomato0.739411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.113520.574
1-1-2/M821.844931
12-2/M820.698560.862
12-4/M821.284841
1-3/M821.709380.277
2-1-1/M820.92435
2-1/M821.586511
2-6/M821.465230.395
3-2/M822.053940.388
4-1-1/M821.656280.938
4-1/M820.80587
4-3-2/M822.399550.508
4-3/M821.04571
5-3/M821.668070.496
6-2/M825.170850.235
6-3/M821.2641
7-1/M82N/AN/A
7-2/M821.3188
9-3-2/M822.220241

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.660370.243
IL2-6/WTpooled1.00792
IL7-5/WTpooled0.918811
IL7-3/WTpooled1.54345
IL12-4/WTpooled1.109020.891
IL1-4/WTpooled0.94350.699
WT/WTpooled0.963051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.935440.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973851
DC3000/delta hrp 6h1.029931
DC3000/delta hrp 12h1.352361
DC3000/delta hrp 24h0.924770.534

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.053980.042
DC3000 delta B/DC3000 delta AB3.85410.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.074491
Exp 36h1.131021
Exp 60h1.242690.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986161
Var 0hN/AN/A
Var 12h I row2-row11.09751
Var 12h NI row2-row11.55376
Var 36h I row2-row11.944470.283
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI1.269380.63
Time course 12hI-12hNI1.242080.774
Time course 36hI-36hNI6.289810.004
Time course 60hI-60hNI63.950.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957960.614
transgenic ySAMdc/azygous control (breaker)0.810370.173
transgenic ySAMdc/azygous control (red)1.289150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.57080.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.922920.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.643891
Manapal/WT (break)0.909091
Manapal/WT (red)1.311911