Expression of 1-1-4.4.10.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.216970.348
27DAP/17DAP1.126670.902
39DAP/27DAP1.39870.325
41DAP/39DAP0.837110.389
42DAP/41DAP1.03811
43DAP/42DAP1.324921
47DAP/43DAP0.747770.269
52DAP/47DAP0.833020.565
57DAP/52DAP1.036570.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.051210.587
17DAP/reference1.152060.143
27DAP/reference0.946580.339
39DAP/reference1.087730.256
41DAP/reference1.032660.855
42DAP/reference0.948820.111
43DAP/reference1.067390.495
47DAP/reference1.204690.005
52DAP/reference1.155560.286
57DAP/reference1.022830.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.092680.749
27DAP/17DAP0.825980.097
39DAP/27DAP0.936320.469
41DAP/39DAP1.486850.284
42DAP/41DAP0.97420.764
43DAP/42DAP1.026050.627
47DAP/43DAP0.974880.857
52DAP/47DAP1.035240.915
57DAP/52DAP0.873910.418
57DAP/7DAP0.789681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.519870.034
17DAP/reference4.993090.006
27DAP/reference6.492980.006
39DAP/reference6.847770.005
41DAP/reference6.814560.011
42DAP/reference9.768570.006
43DAP/reference12.25010.005
47DAP/reference4.51840.13
52DAP/reference9.061310.007
57DAP/reference6.518750.003

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.14920.491
17DAP/reference1.274380.008
27DAP/reference1.379640.026
39DAP/reference1.138790.309
41DAP/reference1.038910.752
42DAP/reference1.170160.079
43DAP/reference0.881820.217
47DAP/reference1.142220.353
52DAP/reference0.870510.031
57DAP/reference1.028970.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.10650.03
17DAP/reference2.153070.343
27DAP/reference5.127410.016
39DAP/reference5.866940.008
41DAP/reference5.253090.015
42DAP/reference4.894560.017
43DAP/reference5.049140.022
47DAP/reference1.125460.155
52DAP/reference5.781490.033
57DAP/reference2.880810.428

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.211370.966
26DAP/20DAP1.531220.338
34DAP/26DAP1.245951
51DAP/34DAP1.101110.814
52DAP/51DAP0.887621
53DAP/52DAP0.61250.052
55DAP/53DAP0.627530.029
57DAP/55DAP1.333580.694
62DAP/57DAP1.12720.833
68DAP/62DAP0.839920.641
68DAP/14DAP1.379430.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.295820.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.340030.059
Mature Green Tomato/Ripe Tomato1.392190.021
Immature Eggplant/Mature Eggplant0.962820.72
Ripe Pepper/Ripe Tomato1.052181
Mature Eggplant/Ripe Tomato0.752941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997951
1-1-2/M821.057531
12-2/M820.680210.535
12-4/M821.018581
1-3/M821.1616
2-1-1/M821.017671
2-1/M821.07873
2-6/M820.918191
3-2/M820.956011
4-1-1/M820.990431
4-1/M82N/AN/A
4-3-2/M821.41676
4-3/M821.014671
5-3/M821.017141
6-2/M820.81992
6-3/M820.74283
7-1/M821.326990.598
7-2/M821.227130.318
9-3-2/M821.258691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.845
IL2-6/WTpooled1.052920.584
IL7-5/WTpooled1.098350.792
IL7-3/WTpooled0.80040.418
IL12-4/WTpooled1.004681
IL1-4/WTpooled0.995631
WT/WTpooled1.059171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035311

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.044540.921
DC3000/delta hrp 6h0.923720.95
DC3000/delta hrp 12h1.158151
DC3000/delta hrp 24h0.936090.523

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.10008
DC3000 delta B/DC3000 delta AB0.977670.916

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.110171
Exp 36h0.701560.623
Exp 60h0.855920.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991661
Var 0h1.000921
Var 12h I row2-row10.963020.856
Var 12h NI row2-row10.968640.906
Var 36h I row2-row11.037251
Var 36h NI row2-row12.365391
Var 60h I row2-row11.007071
Var 60h NI row2-row10.964260.756
Time course 0hI-0hNI0.995881
Time course 12hI-12hNI0.997611
Time course 36hI-36hNI0.910820.162
Time course 60hI-60hNI0.875870.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.059020.261
transgenic ySAMdc/azygous control (breaker)1.399050.172
transgenic ySAMdc/azygous control (red)0.970851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.130740.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.664230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.923161
Manapal/WT (break)0.881770.333
Manapal/WT (red)1.199220.413