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Expression of 1-1-4.4.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.797230.324
27DAP/17DAP1.121510.881
39DAP/27DAP2.019430.07
41DAP/39DAP0.845810.409
42DAP/41DAP1.006311
43DAP/42DAP1.100040.94
47DAP/43DAP0.766090.321
52DAP/47DAP2.245210.12
57DAP/52DAP1.748660.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.994810.693
17DAP/reference0.953360.474
27DAP/reference1.121580.135
39DAP/reference1.111950.593
41DAP/reference1.109620.073
42DAP/reference1.13390.018
43DAP/reference1.033220.678
47DAP/reference1.388940.006
52DAP/reference1.558910.011
57DAP/reference1.362670.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.132880.687
27DAP/17DAP1.11310.954
39DAP/27DAP1.311360.418
41DAP/39DAP1.057191
42DAP/41DAP1.146080.651
43DAP/42DAP0.99890.875
47DAP/43DAP1.036250.957
52DAP/47DAP1.559150.219
57DAP/52DAP2.308170.029
57DAP/7DAP2.431250.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056860.435
17DAP/reference0.816070.017
27DAP/reference1.063120.371
39DAP/reference0.841990.015
41DAP/reference0.834730.038
42DAP/reference1.322260.009
43DAP/reference1.200080.043
47DAP/reference1.203390.042
52DAP/reference0.97470.477
57DAP/reference0.917390.137

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979130.72
17DAP/reference0.73930.012
27DAP/reference0.918560.212
39DAP/reference0.824240.041
41DAP/reference0.873390.085
42DAP/reference0.978160.534
43DAP/reference0.984590.657
47DAP/reference1.137810.069
52DAP/reference0.722510.004
57DAP/reference0.875810.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.797370.061
17DAP/reference0.800980.135
27DAP/reference0.749090.032
39DAP/reference0.984150.591
41DAP/reference0.939870.417
42DAP/reference0.990390.816
43DAP/reference0.922110.281
47DAP/reference1.099160.934
52DAP/reference1.310990.091
57DAP/reference2.517170.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.088390.966
26DAP/20DAP0.826410.512
34DAP/26DAP0.778940.182
51DAP/34DAP1.374330.058
52DAP/51DAP0.805911
53DAP/52DAP1.30510.307
55DAP/53DAP0.867250.303
57DAP/55DAP1.578460.461
62DAP/57DAP0.887810.28
68DAP/62DAP0.89480.609
68DAP/14DAP0.870621

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.916460.047

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.688340.181
Mature Green Tomato/Ripe Tomato0.387760.014
Immature Eggplant/Mature Eggplant1.300980.053
Ripe Pepper/Ripe Tomato0.72681
Mature Eggplant/Ripe Tomato0.634780.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.855830.708
1-1-2/M820.977061
12-2/M821.115240.61
12-4/M821.04687N/A
1-3/M821.551160.26
2-1-1/M821.06691
2-1/M821.240581
2-6/M820.895791
3-2/M821.15850.717
4-1-1/M820.869011
4-1/M820.764210.737
4-3-2/M820.699970.698
4-3/M821.25830.268
5-3/M821.110721
6-2/M821.01832N/A
6-3/M820.847191
7-1/M820.974791
7-2/M820.968751
9-3-2/M820.803830.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.198570.277
IL2-6/WTpooled0.931281
IL7-5/WTpooled0.55862N/A
IL7-3/WTpooled1.083411
IL12-4/WTpooled0.970961
IL1-4/WTpooled0.940140.444
WT/WTpooled1.00861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.862780.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.126750.758
DC3000/delta hrp 6h0.793710.95
DC3000/delta hrp 12h0.93231
DC3000/delta hrp 24h0.893180.19

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.291380.042
DC3000 delta B/DC3000 delta AB1.306240.146

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.946371
Exp 36h1.369070.693
Exp 60h1.394220.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025911
Var 0h0.990011
Var 12h I row2-row11.106310.58
Var 12h NI row2-row11.132711
Var 36h I row2-row11.2050.601
Var 36h NI row2-row10.921720.706
Var 60h I row2-row10.773580.292
Var 60h NI row2-row11.067961
Time course 0hI-0hNI1.002141
Time course 12hI-12hNI1.068790.599
Time course 36hI-36hNI1.187370.19
Time course 60hI-60hNI2.4350.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.120620.238
transgenic ySAMdc/azygous control (breaker)0.516350.131
transgenic ySAMdc/azygous control (red)1.12180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.051250.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.712770.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.662521
Manapal/WT (break)0.749971
Manapal/WT (red)0.590610.181