Expression of 1-1-4.4.19.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85934 | 0.413 |
27DAP/17DAP | 0.86746 | 0.674 |
39DAP/27DAP | 1.45557 | 0.579 |
41DAP/39DAP | 0.79244 | 0.281 |
42DAP/41DAP | 1.06847 | 1 |
43DAP/42DAP | 1.10312 | 1 |
47DAP/43DAP | 0.92819 | 0.736 |
52DAP/47DAP | 1.16507 | 0.804 |
57DAP/52DAP | 1.24936 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29808 | 0.685 |
17DAP/reference | 1.01189 | 0.904 |
27DAP/reference | 0.94516 | 0.581 |
39DAP/reference | 0.86113 | 0.118 |
41DAP/reference | 1.10853 | 0.714 |
42DAP/reference | 1.17249 | 0.504 |
43DAP/reference | 0.87689 | 0.234 |
47DAP/reference | 1.20717 | 0.136 |
52DAP/reference | 1.47494 | 0.158 |
57DAP/reference | 1.33159 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96444 | 0.644 |
27DAP/17DAP | 0.97626 | 0.887 |
39DAP/27DAP | 1.11876 | 0.394 |
41DAP/39DAP | 1.05557 | 0.69 |
42DAP/41DAP | 0.99679 | 0.887 |
43DAP/42DAP | 0.99645 | 1 |
47DAP/43DAP | 0.9843 | 0.886 |
52DAP/47DAP | 0.93873 | 0.726 |
57DAP/52DAP | 0.93284 | 0.566 |
57DAP/7DAP | 0.92598 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.64599 | 0.052 |
17DAP/reference | 2.36451 | 0.008 |
27DAP/reference | 2.08966 | 0.017 |
39DAP/reference | 3.39537 | 0.005 |
41DAP/reference | 3.76952 | 0.015 |
42DAP/reference | 4.61973 | 0.006 |
43DAP/reference | 3.48349 | 0.007 |
47DAP/reference | 2.28189 | 0.324 |
52DAP/reference | 2.33835 | 0.007 |
57DAP/reference | 1.64834 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.005 | 0.592 |
17DAP/reference | 0.62552 | 0.017 |
27DAP/reference | 1.2721 | 0.419 |
39DAP/reference | 0.96131 | 0.526 |
41DAP/reference | 1.07713 | 0.944 |
42DAP/reference | 1.30241 | 0.066 |
43DAP/reference | 0.93412 | 0.414 |
47DAP/reference | 1.13496 | 0.377 |
52DAP/reference | 1.12074 | 0.747 |
57DAP/reference | 0.95345 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54291 | 0.025 |
17DAP/reference | 1.65209 | 0.273 |
27DAP/reference | 1.88959 | 0.025 |
39DAP/reference | 2.88181 | 0.004 |
41DAP/reference | 2.11461 | 0.056 |
42DAP/reference | 2.32366 | 0.012 |
43DAP/reference | 1.594 | 0.026 |
47DAP/reference | 1.02876 | 0.626 |
52DAP/reference | 2.73755 | 0.061 |
57DAP/reference | 1.68836 | 0.511 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.79173 | 0.407 |
26DAP/20DAP | 0.66934 | 0.244 |
34DAP/26DAP | 1.43062 | 0.819 |
51DAP/34DAP | 0.67746 | 0.504 |
52DAP/51DAP | 1.07174 | 0.651 |
53DAP/52DAP | 1.33662 | 0.044 |
55DAP/53DAP | 1.13044 | 0.547 |
57DAP/55DAP | 0.83263 | 0.337 |
62DAP/57DAP | 0.90942 | 0.681 |
68DAP/62DAP | 0.95556 | 0.885 |
68DAP/14DAP | 0.90828 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.35313 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.12693 | 0.149 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.12569 | |
Mature Eggplant/Ripe Tomato | 0.46564 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97738 | |
1-1-2/M82 | 0.94777 | 1 |
12-2/M82 | 0.69366 | |
12-4/M82 | 1.2709 | 1 |
1-3/M82 | 1.36919 | 0.479 |
2-1-1/M82 | 0.91894 | |
2-1/M82 | 0.79306 | |
2-6/M82 | 0.89437 | 1 |
3-2/M82 | 1.28699 | 0.463 |
4-1-1/M82 | 1.00372 | 1 |
4-1/M82 | 1.10875 | |
4-3-2/M82 | 1.30666 | 0.508 |
4-3/M82 | 0.74584 | 0.72 |
5-3/M82 | 1.43134 | 0.455 |
6-2/M82 | 0.82076 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.29697 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.32194 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.08401 | 0.277 |
IL2-6/WTpooled | 0.9134 | 0.473 |
IL7-5/WTpooled | 1.0731 | 1 |
IL7-3/WTpooled | 1.05659 | 1 |
IL12-4/WTpooled | 0.93619 | 0.71 |
IL1-4/WTpooled | 1.06175 | 1 |
WT/WTpooled | 0.90725 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01256 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86407 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.21009 | 1 |
DC3000/delta hrp 24h | 1.69282 | 0.039 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.70929 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.8332 | 0.189 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03542 | 1 |
Var 0h | 0.53447 | 0.936 |
Var 12h I row2-row1 | 0.92722 | 0.705 |
Var 12h NI row2-row1 | 0.95233 | 0.713 |
Var 36h I row2-row1 | 0.96655 | 1 |
Var 36h NI row2-row1 | 0.90431 | 0.706 |
Var 60h I row2-row1 | 0.95402 | 0.952 |
Var 60h NI row2-row1 | 0.8166 | 0.359 |
Time course 0hI-0hNI | 1.06214 | 0.377 |
Time course 12hI-12hNI | 1.0142 | 0.818 |
Time course 36hI-36hNI | 1.16052 | 0.013 |
Time course 60hI-60hNI | 1.73376 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.25494 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03232 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.33352 | 0.055 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.76649 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.91996 | 0.333 |
Manapal/WT (red) | 1.10393 | 1 |
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