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Expression of 1-1-4.4.2.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920160.586
27DAP/17DAP0.875450.683
39DAP/27DAP1.379870.546
41DAP/39DAP0.988090.962
42DAP/41DAP1.160160.938
43DAP/42DAP0.92820.783
47DAP/43DAP1.022780.966
52DAP/47DAP0.912810.702
57DAP/52DAP1.274750.776

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.942590.442
17DAP/reference0.890150.104
27DAP/reference0.904010.232
39DAP/reference0.887820.103
41DAP/reference0.902470.267
42DAP/reference0.902590.02
43DAP/reference1.023120.812
47DAP/reference0.975630.366
52DAP/reference1.119630.062
57DAP/reference1.209220.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.935980.542
27DAP/17DAP1.095790.885
39DAP/27DAP0.82550.247
41DAP/39DAP1.073110.876
42DAP/41DAP0.989570.737
43DAP/42DAP1.052671
47DAP/43DAP1.153710.376
52DAP/47DAP0.949020.777
57DAP/52DAP0.911210.555
57DAP/7DAP1.024931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104180.332
17DAP/reference1.409490.011
27DAP/reference1.310620.015
39DAP/reference1.345070.011
41DAP/reference1.349090.029
42DAP/reference1.509240.009
43DAP/reference1.438920.015
47DAP/reference1.206830.353
52DAP/reference1.23150.016
57DAP/reference1.296070.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015640.903
17DAP/reference0.89880.07
27DAP/reference1.029840.888
39DAP/reference1.0330.824
41DAP/reference1.003630.718
42DAP/reference0.983150.534
43DAP/reference1.144810.343
47DAP/reference1.05810.556
52DAP/reference1.003950.713
57DAP/reference0.996010.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044370.545
17DAP/reference0.983790.696
27DAP/reference1.394590.12
39DAP/reference1.220480.067
41DAP/reference0.995050.682
42DAP/reference1.020430.836
43DAP/reference1.135290.349
47DAP/reference1.106010.73
52DAP/reference0.967640.663
57DAP/reference1.100550.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.175650.966
26DAP/20DAP1.044491
34DAP/26DAP0.815040.067
51DAP/34DAP0.951050.727
52DAP/51DAP1.173020.836
53DAP/52DAP1.06550.83
55DAP/53DAP0.932980.686
57DAP/55DAP1.216680.728
62DAP/57DAP1.226640.393
68DAP/62DAP1.208530.713
68DAP/14DAP1.141470.17

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.603810.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.435220.099
Mature Green Tomato/Ripe Tomato0.650230.027
Immature Eggplant/Mature Eggplant0.855940.493
Ripe Pepper/Ripe Tomato0.936361
Mature Eggplant/Ripe Tomato0.786751

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.994331
1-1-2/M821.102181
12-2/M820.920140.955
12-4/M820.951261
1-3/M820.719460.501
2-1-1/M821.184160.366
2-1/M821.105N/A
2-6/M821.061110.405
3-2/M820.94636N/A
4-1-1/M821.269920.72
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.267910.268
5-3/M820.975751
6-2/M821.03553N/A
6-3/M821.176261
7-1/M82N/AN/A
7-2/M821.053530.385
9-3-2/M821.08093N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled2.854121
IL12-4/WTpooled1.6283N/A
IL1-4/WTpooled1.66217N/A
WT/WTpooled0.976291

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.161550.154

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.080060.921
DC3000/delta hrp 6h1.064151
DC3000/delta hrp 12h1.03341
DC3000/delta hrp 24h1.251880.085

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.327690.042
DC3000 delta B/DC3000 delta AB1.93140.122

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.163531
Exp 36h1.560450.489
Exp 60h1.395720.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010261
Var 0h0.968451
Var 12h I row2-row10.944350.77
Var 12h NI row2-row11.158710.235
Var 36h I row2-row11.080211
Var 36h NI row2-row10.760810.522
Var 60h I row2-row10.919050.285
Var 60h NI row2-row10.821820.408
Time course 0hI-0hNI0.997691
Time course 12hI-12hNI1.136570.164
Time course 36hI-36hNI2.285640.004
Time course 60hI-60hNI3.600780.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.861820.257
transgenic ySAMdc/azygous control (breaker)1.022251
transgenic ySAMdc/azygous control (red)0.974241

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006090.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.793810.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.998661
Manapal/WT (break)0.800590.333
Manapal/WT (red)0.775740.181