Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-4.4.9.12

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.16904	0.656
27DAP/17DAP	1.14286	0.845
39DAP/27DAP	0.86223	0.529
41DAP/39DAP	1.18505	0.359
42DAP/41DAP	1.10023	0.933
43DAP/42DAP	0.9208	0.77
47DAP/43DAP	1.3464	0.542
52DAP/47DAP	0.94849	0.734
57DAP/52DAP	1.07167	0.996

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00443	1
17DAP/reference	1.07369	0.122
27DAP/reference	0.98921	0.694
39DAP/reference	1.02212	0.294
41DAP/reference	0.99964	1
42DAP/reference	0.99567	0.587
43DAP/reference	1.02103	0.445
47DAP/reference	1.01729	0.646
52DAP/reference	0.98859	0.598
57DAP/reference	1.06631	0.202

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.97086	0.542
27DAP/17DAP	1.01723	0.957
39DAP/27DAP	1.01395	0.742
41DAP/39DAP	1.01047	0.876
42DAP/41DAP	0.99698	0.92
43DAP/42DAP	1.03318	0.23
47DAP/43DAP	0.97058	0.696
52DAP/47DAP	1.01009	0.979
57DAP/52DAP	0.97496	0.646
57DAP/7DAP	1.02852	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.75891	0.146
17DAP/reference	0.81001	0.039
27DAP/reference	0.8958	0.076
39DAP/reference	0.84426	0.043
41DAP/reference	0.75648	0.022
42DAP/reference	0.74107	0.018
43DAP/reference	0.69897	0.014
47DAP/reference	0.7652	0.101
52DAP/reference	0.79237	0.022
57DAP/reference	1.02081	0.61

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.13709	0.117
17DAP/reference	1.03883	0.406
27DAP/reference	0.95938	0.257
39DAP/reference	1.10265	0.514
41DAP/reference	1.0514	0.752
42DAP/reference	1.00377	0.723
43DAP/reference	1.15836	0.073
47DAP/reference	0.96208	0.261
52DAP/reference	1.02284	0.559
57DAP/reference	1.05849	0.188

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89134	0.214
17DAP/reference	0.9507	0.508
27DAP/reference	0.8585	0.147
39DAP/reference	0.81259	0.011
41DAP/reference	0.88658	0.107
42DAP/reference	0.76285	0.041
43DAP/reference	0.80895	0.079
47DAP/reference	0.94914	0.335
52DAP/reference	1.99493	0.558
57DAP/reference	0.90498	0.238

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.99246	1
26DAP/20DAP	0.97726	1
34DAP/26DAP	1.01336	1
51DAP/34DAP	1.01668	0.869
52DAP/51DAP	0.99202	1
53DAP/52DAP	1.0286	N/A
55DAP/53DAP	1.0459	0.898
57DAP/55DAP	0.91063	0.718
62DAP/57DAP	0.97513	0.994
68DAP/62DAP	0.95567	0.787
68DAP/14DAP	1.16858	0.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.99087	0.547

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.31255	0.026
Immature Eggplant/Mature Eggplant	1.39099	0.101
Ripe Pepper/Ripe Tomato	0.72069	0.293
Mature Eggplant/Ripe Tomato	0.57719	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.98848	0.961
1-1-2/M82	0.97533	1
12-2/M82	0.95564	0.74
12-4/M82	1.02055	1
1-3/M82	1.06546	1
2-1-1/M82	0.98815	1
2-1/M82	1.44782	N/A
2-6/M82	0.96043	1
3-2/M82	1.02835	N/A
4-1-1/M82	1.06305	1
4-1/M82	0.84233	N/A
4-3-2/M82	1.07684	N/A
4-3/M82	0.95501	1
5-3/M82	1.02631	1
6-2/M82	1.02383	1
6-3/M82	0.97455	1
7-1/M82	1.05382	N/A
7-2/M82	1.06185	1
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.9575	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.0085	0.921
DC3000/delta hrp 6h	1.09017	1
DC3000/delta hrp 12h	0.95601	1
DC3000/delta hrp 24h	1.08101	0.37

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.09102	0.229
DC3000 delta B/DC3000 delta AB	1.10561	0.336

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.90044	1
Exp 36h	0.88691	0.589
Exp 60h	1.07508	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02162	1
Var 0h	0.96391	1
Var 12h I row2-row1	1.12626	0.211
Var 12h NI row2-row1	0.96991	0.82
Var 36h I row2-row1	1.03108	1
Var 36h NI row2-row1	1.26835	1
Var 60h I row2-row1	1.19043	1
Var 60h NI row2-row1	1.07413	0.904
Time course 0hI-0hNI	1.04953	0.852
Time course 12hI-12hNI	1.05441	0.743
Time course 36hI-36hNI	1.01313	0.881
Time course 60hI-60hNI	1.18722	0.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.93256	0.286
transgenic ySAMdc/azygous control (breaker)	0.91322	0.49
transgenic ySAMdc/azygous control (red)	1.06279	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.99538	0.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.01106	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.25421	0.105
Manapal/WT (break)	1.23279	0.183
Manapal/WT (red)	0.99943	1