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Expression of 1-1-5.1.10.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.091210.725
27DAP/17DAP1.158520.833
39DAP/27DAP0.85810.495
41DAP/39DAP1.522170.209
42DAP/41DAP1.076281
43DAP/42DAP0.955210.877
47DAP/43DAP1.037230.873
52DAP/47DAP1.17920.649
57DAP/52DAP0.992530.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.03510.638
17DAP/reference1.060370.193
27DAP/reference1.063720.227
39DAP/reference1.008070.975
41DAP/reference1.058430.624
42DAP/reference1.018070.504
43DAP/reference0.964350.5
47DAP/reference0.905230.027
52DAP/reference0.790690.043
57DAP/reference0.834350.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985020.75
27DAP/17DAP1.029190.923
39DAP/27DAP1.009850.832
41DAP/39DAP1.071590.827
42DAP/41DAP1.06510.635
43DAP/42DAP1.019320.699
47DAP/43DAP0.988330.928
52DAP/47DAP0.997630.969
57DAP/52DAP1.030550.79
57DAP/7DAP1.213521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952480.27
17DAP/reference0.926720.028
27DAP/reference0.895020.01
39DAP/reference1.012310.74
41DAP/reference1.002911
42DAP/reference1.037040.405
43DAP/reference1.005481
47DAP/reference0.968230.168
52DAP/reference0.94540.035
57DAP/reference0.943010.118

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.074270.308
17DAP/reference1.033520.824
27DAP/reference0.924140.366
39DAP/reference0.90970.074
41DAP/reference0.859080.026
42DAP/reference0.988730.594
43DAP/reference1.033570.777
47DAP/reference1.023670.775
52DAP/reference0.99190.619
57DAP/reference1.08660.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01750.75
17DAP/reference0.956990.286
27DAP/reference0.887410.051
39DAP/reference0.89670.069
41DAP/reference0.91150.096
42DAP/reference0.867840.071
43DAP/reference0.848730.049
47DAP/reference0.980650.538
52DAP/reference0.908350.208
57DAP/reference0.73490.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.926771
26DAP/20DAP0.86590.512
34DAP/26DAP1.069821
51DAP/34DAP0.905610.563
52DAP/51DAP1.00730.904
53DAP/52DAP1.077680.319
55DAP/53DAP1.044470.869
57DAP/55DAP1.192030.728
62DAP/57DAP1.097180.723
68DAP/62DAP1.130530.827
68DAP/14DAP0.859651

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.047770.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.68639N/A
Mature Green Tomato/Ripe Tomato0.893030.377
Immature Eggplant/Mature Eggplant1.172320.081
Ripe Pepper/Ripe Tomato1.922390.256
Mature Eggplant/Ripe Tomato0.634881

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.905150.841
1-1-2/M820.972881
12-2/M821.000731
12-4/M820.947381
1-3/M820.950981
2-1-1/M821.02451
2-1/M820.995581
2-6/M821.161030.505
3-2/M820.79892N/A
4-1-1/M820.997091
4-1/M820.939591
4-3-2/M820.880691
4-3/M821.08981
5-3/M821.027251
6-2/M821.219971
6-3/M820.937811
7-1/M821.04053N/A
7-2/M820.924460.881
9-3-2/M820.66318N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.97025N/A
IL1-4/WTpooled0.89482N/A
WT/WTpooled1.01651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.007761

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.93670.868
DC3000/delta hrp 6h0.867410.95
DC3000/delta hrp 12h1.098451
DC3000/delta hrp 24h1.000261

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.14480.16
DC3000 delta B/DC3000 delta AB1.021620.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.371261
Exp 36h1.094861
Exp 60h1.213580.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030371
Var 0h2.593130.936
Var 12h I row2-row11.124790.296
Var 12h NI row2-row10.961650.713
Var 36h I row2-row10.99161
Var 36h NI row2-row10.913410.706
Var 60h I row2-row11.88051
Var 60h NI row2-row11.144740.904
Time course 0hI-0hNI1.176690.603
Time course 12hI-12hNI1.118450.507
Time course 36hI-36hNI0.940380.139
Time course 60hI-60hNI0.993091

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016690.921
transgenic ySAMdc/azygous control (breaker)1.517840.178
transgenic ySAMdc/azygous control (red)0.978791

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.044230.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.049111

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.719261
Manapal/WT (break)1.253120.14
Manapal/WT (red)1.532870.137